Zingiber officinale (ginger): 122025362
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Entry
122025362 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122025362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122025362
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
122025362
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
HECT type E3
122025362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
ARM_ARMC5
HEAT_SCC3-SA
Motif
Other DBs
NCBI-GeneID:
122025362
NCBI-ProteinID:
XP_042440101
LinkDB
All DBs
Position
9B:2074182..2082352
Genome browser
AA seq
1500 aa
AA seq
DB search
MDRDQKSTDCDEELTVDSQDCSSSDDHSSSSSSSASDSKSQDPVSDGDGESSDHELPGYD
PFNFNGVDEYVLMRRMHKVVLALAADGSEESAQLATLTELCEVLSAMEYATQGYRLKALV
QPLVNLASKDGNPKILLQAVRALTYLCDVRPSIAEEIVRHGAIPVLCGKLLAIEYLDVAE
QCLEALEKLSKEQPVACLQAGTVNAVLTFIDFLPSNIQQVAVTTITNICKKLPPDCSSII
MEAVPTLCSLLQYENVKLVETVSLCLEWIVFSVRHSPNFMDELFKHGVLQKSLELLANDN
HKSLSSSTFSGLMGVLTRLAFSSKLAVRTLFELSISRTLSSILIGSDVSDNSAVVSTEDV
QNSQVFKALNLANLLIPPREGNVPNNQNMQAEEKILMDESNFLFKFSLEFLPASIQVVNN
GANDCVCYACLSIIKRIARYSTPDMLLESFKDKNISSFLAGLLARKDIHLLTSTMEIVEI
LMQKLPGVFLSSFVKEGVFYAINMLLMQEESTASAQHSDDKIHARDVSRCLCYVFFSSSI
HPSEVRPCMLKEDAVQNLVKHIKNCYHLANGVANSDMSCTKTLQHLKTLCSALSDSGGKQ
LNDVGDLQDSTQILDEVMREISQGEPLSTFEFVESGIARSLAHYLCNDKYLLGIHDIGLS
DHILTVLKKFQIFASICLSKPSQSCMETILLFLVKKLLNALSSLDSFPVLKSQMFKPRDS
YTDIPRTRFTKNPSLKVRFVRDKEESNLMDFDKILSVDISCSLVEVVEAYLWPKVSNQHI
LPTVTVDNHISKPHFTASRLQNASERSRIETHKYISYGTSVSNSSEVIRSEEGQLLPAEI
SKKLSSDTDIAQGRMTIVSPSVANTKPRLSFSLRGKQLDRSNTLYQAVLEDQISSKVVTI
VGSKFWDQVYVFTYKIAEEEKTDKNHKLDSVSKSNFFLNKLGFSWQKLPFFPTKLQAEFP
SNIDRANSSYDFLFMWKILEGLNRFSLELLTDERIGAFAEGRIDNFDDLKLIASSVPEVE
FVSSKLTDKLEQQMRDNLVLQTGCFPTWCSQLMNACPFLFSFEARLKYFYLTAFGSLRNQ
RSNMLHSGSSCSNSVSEWHSYSSSPPRKKFKVDRNSILECAAKMMKLHAQSKGSLEVEYE
EEVGTGLGPTMEFYTLISQEFQKAGLGMWREDHCSCKSSTRGDSSFLFAPCGLFPRPWSR
TRSDPFEFSDVKEKFLLLGMLVARAIKDGRMLDIPLSRAFYKIMLEQELNICDIQSFDPE
LGRILLEFRALANRKKFVESVSGESNTVPSKLYYRNMSVEDLSLDFTLPGYPYYELASES
VKMVNIDNLEEYVALVVDATIGSGVARQINAFKCGFNEVFPLKYLQMFTEDDLERLLCGE
QDAWKLSELVDHIKFDHGYNASSPTAIDLLDIIQEFDYDQRRAFLQFVTGAPRLAHGGLA
ALNPKLTVVRKHSDFGADLGLPSVMTCANYLKLPQYSSKDIMRERLLYAISEGQGSFHLS
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtgatcagaagagcacggattgtgatgaagaactcacagtggatagccaggat
tgcagctcctcagacgaccactcctcctcttcctcttcctctgcctccgactcgaaatcc
caggacccggtctcggacggcgacggcgagtcgtcggaccatgagttgcccggttatgat
ccgttcaacttcaatggcgtggatgagtatgtcttgatgcggaggatgcacaaggtcgtc
cttgccctcgccgctgatggatcggaggaatccgcgcaactggccaccctgaccgagctt
tgcgaggttctctccgccatggagtacgccacgcagggctaccgcttgaaggcgctcgtg
cagcctctagtgaatcttgcttccaaggatggcaaccccaagatcctgcttcaggctgta
agagcgctaacttatctctgcgacgtgaggccgtcgatagccgaagaaatcgtgcggcat
ggcgcaattcctgtcctctgtggaaagcttttagctatcgaatacttggacgttgctgag
cagtgtctcgaagcattggagaagctttcgaaggaacaacctgttgcatgtttacaagcg
ggaactgttaatgcggtcttaacttttatcgatttccttccatctaatattcagcaagtt
gcggttacaacaataactaatatatgcaagaaacttccgcctgattgctcatcaattata
atggaagcagtccccacgttatgcagtcttctccagtatgagaacgtgaagctggttgaa
actgtttctttgtgtctggaatggatagttttctctgttcgccattcccctaactttatg
gatgaactgttcaaacatggggtgctacagaagtccttggaattgttagctaatgataat
cacaagtcacttagcagctcgaccttttccggtttaatgggtgttcttaccagactcgct
ttttcttctaagctagctgttaggaccctatttgagcttagtatcagcagaactttgagc
agcatcttaatcggttctgacgtgtcagataactctgcggttgtttctactgaagatgtg
caaaatagtcaggtatttaaagcattaaatttagctaacttgctaattcctccaagagag
ggaaatgttccaaacaatcaaaacatgcaagctgaggagaagattttaatggatgaatcc
aatttcttgtttaaattctctttggaatttcttccagcttccatccaggttgtgaacaat
ggtgcaaatgattgtgtatgctatgcctgtctttccatcataaaacgtattgcccgttat
agcacgcctgatatgcttttggaatcattcaaagataaaaatatctcaagttttttggca
gggctgttggccagaaaagatatacatctactaacttctacaatggagattgttgagatt
ctgatgcaaaaacttcccggtgttttcttaagctcttttgtcaaggaaggagtattttat
gctatcaacatgcttttaatgcaagaagaatccacagcatctgcacaacactcagatgac
aaaatacatgccagagatgtttccagatgcctgtgctatgtgtttttttcatctagcatt
cacccttctgaagtaagaccgtgcatgctgaaagaggatgctgttcaaaatttggtaaag
cacataaaaaattgctaccatttggccaatggagtagccaactctgacatgtcatgtact
aaaactcttcaacatctcaagactttgtgcagtgcgctaagtgatagtgggggcaaacaa
ttaaatgatgttggtgaccttcaagattcgactcaaatattagatgaagtgatgagagaa
atttctcagggagagcctttatcaacttttgagtttgttgagagtggtattgctagatct
ctggctcattatttatgcaatgacaagtatctgcttggaattcatgatattggcttatca
gatcacattctaactgtgctgaagaaattccaaatatttgcttcaatttgcttgtcaaag
cctagtcaaagttgcatggaaactattttgcttttcttagtgaagaagctgctgaatgca
ttgtcttcgttggatagctttcctgttcttaaaagccaaatgtttaagccaagagacagt
tacacagatatccctcgtacacgattcactaagaacccttctctaaaagttcgctttgtg
cgtgacaaagaagagtcaaatttaatggactttgataagattctaagtgttgatatttct
tgttccttagtagaagttgtagaagcatatctctggcctaaagttagcaaccagcatata
cttccgacagtgacagtggataaccatatcagcaaaccacacttcacagcttcaaggtta
cagaatgcctcagaaaggagtcgtatagaaacacacaaatacatctcgtatgggacaagt
gtttcaaattcatcagaggtaattagaagtgaagagggacaacttttacccgcagagatt
agcaaaaaattgtcatctgacacggatattgctcaaggaagaatgacaatagtatctcca
agtgttgcaaacacaaagccaagattatcttttagcttgagaggaaaacaacttgaccgc
tctaacaccctttatcaagcagttctagaggatcaaatatcttcaaaagttgtcacaata
gtggggtcaaaattctgggatcaagtttacgtatttacctataaaatagctgaagaagaa
aaaacagacaaaaaccacaagcttgattcggtttctaagtcaaatttcttcttgaataag
cttgggttctcatggcagaaacttccctttttccctaccaaattacaagctgagtttcct
tctaacattgatagagcgaattcctcatatgattttttatttatgtggaaaatattggag
ggcttgaaccgcttttcattggaattgttgactgatgaaagaattggtgcatttgctgaa
gggagaatagataactttgatgatttgaagttgatagcttcttcagttccagaagttgag
tttgtgagtagcaagctaactgataagttggagcagcaaatgagagacaatctggtatta
caaactggttgttttccaacatggtgtagccagttaatgaatgcatgccctttcttattt
tcttttgaggcaagattgaagtacttctacctcacagcatttggttctttaagaaatcag
cgcagcaacatgctacattcaggtagcagctgctcaaactccgtcagcgaatggcactct
tattcaagttctcccccacgcaagaagtttaaagttgaccggaacagcatccttgaatgt
gctgcaaaaatgatgaaattacatgctcaaagtaagggctctcttgaagtagaatatgaa
gaggaagttggtactggtctaggtcctacaatggagttctacacactaataagtcaagaa
tttcaaaaggctggattgggtatgtggagagaggatcactgttcctgtaaaagtagcact
cgtggtgattcttcatttttgtttgctccatgtggactgtttcctcgtccatggtcaaga
acaaggtcagatccttttgaattctcagatgtgaaggaaaagttcctcctcctcggcatg
ctggtagccagggcaattaaagatgggaggatgttggatataccactttcgagagccttc
tataagattatgctcgagcaggagcttaatatatgtgatatccagtcatttgacccagaa
ctcggaaggattttactggagtttcgagctcttgccaataggaaaaagtttgttgaatca
gtttctggagaaagtaacacggttccatcaaagttatattacaggaacatgagcgtagag
gatctctctcttgatttcactcttccaggctacccctattatgaacttgcatcagagagt
gtaaagatggtgaatattgacaacttggaagaatatgttgcgctggtggtagatgcaaca
attggcagtggagttgcgagacaaattaatgccttcaagtgtggatttaatgaggtattt
cctctgaaatatcttcagatgttcactgaagatgatttggagcggctactttgtggagaa
caggacgcttggaaattatcagagcttgtggatcacattaagttcgaccatgggtataat
gcaagtagccctacggccatcgatttgttagatatcattcaagaatttgattatgatcag
cgcagagctttcttgcaattcgtaactggagctcctcgtctcgcccacggaggcttggct
gcccttaacccaaaactaacagtagttcggaagcactctgattttggagctgatctgggc
ttgcccagtgtcatgacttgtgctaattatctaaagctcccccaatactcatccaaggac
ataatgagagagagattgttatacgcaatatccgaaggtcagggatcgtttcacctctcg
tag
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integrated database retrieval system
