Zingiber officinale (ginger): 122025471
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Entry
122025471 CDS
T08725
Name
(RefSeq) tRNA pseudouridine synthase A-like
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
122025471
Enzymes [BR:
zof01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
122025471
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
122025471
Prokaryotic type
122025471
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
122025471
NCBI-ProteinID:
XP_042440215
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All DBs
Position
9B:118836170..118838641
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AA seq
513 aa
AA seq
DB search
MSSSPPHPPKKLKMSSSATTSDAEETPSSAPGEPRRRYKRRKVAIFLGYCGAGYQGMQKN
PGARTIEGDLEEALFLADAVPASDRGLSRRYDWARSARTDKGVSAAAQVVSGRFYVDPPG
FVARLNAHLPDQITVFGFKRVTNSFSAKKFCDRRRYVYLLPVFSLDPSAHPDRESVMASI
GSDNELTRCLECSERGRKIPTSMDPFSQGSKQEERPDSEQVEDGKFESTKLEKPDIVARA
GAGDDQLGAQDIILTKNQPETADSISMEGELRASNVDECGNPSNRDSFLEERSTMQTVVH
DESNEQLTAKTKFCYDDEQKARFNQILQHYVGTHNFHNLTTRIKPEDPSARRYIISFNAN
SVVCIDGIEFVKCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESLMDVALRKDVRINVPTA
PEVGLFLDECQFTSYNNQWKDSHEPLTMDAYAEEAEDFKMKYIYPHIASMEHKEGAVALW
LHSLNHRNYPDLGFMETSVCAGAHEKHVENLAE
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctctcctccccaccctcccaagaagctcaagatgtcctcctccgccaccacc
tccgacgccgaggagaccccttcgtccgcccccggcgaaccccggcggcgctacaagcgt
cgcaaggtggccatcttcctcggctactgcggcgccgggtaccagggcatgcagaagaac
cccggcgcccgaaccattgagggggatctagaggaggccctcttcctcgccgacgctgtc
cctgcttccgaccgcggcctctcgcgccgctacgattgggcccgatctgctcgcaccgac
aagggcgtcagcgctgctgctcaggtcgtctcgggacgcttctacgtcgatccgcctggc
ttcgttgcccgcctcaacgcccacctccctgaccagatcaccgtcttcggcttcaagcga
gtcaccaattccttcagcgccaagaaattctgtgatcggcgacggtacgtctaccttctt
cccgtgttttcccttgaccctagcgcacatccggaccgggagtccgtcatggcgagcatc
ggatctgacaacgagctcactcgttgcttagagtgctcagaaaggggacgcaagatacct
acctccatggatcccttttctcagggatctaagcaggaagaaaggcctgattctgaacaa
gttgaggatggtaaatttgagtcaactaagctagaaaaacctgatattgttgcaagggct
ggagctggtgatgatcaacttggtgcccaagatataattttgactaaaaatcaacctgaa
actgctgattctatatcgatggaaggtgagcttagggcttccaatgtggatgaatgtggt
aatccaagcaatagggattccttcttggaagagagatccacaatgcaaactgtagttcat
gatgaatccaatgagcaactgactgccaaaaccaagttttgttatgatgatgaacagaaa
gcaagattcaatcaaatcctacagcattatgtaggaacccataacttccataacctcacg
actagaattaagcctgaagatccctctgctcgtcgttacatcatatccttcaatgcaaat
agtgtcgtttgtattgacgggattgagtttgtgaagtgtgaagttgtagggcagagcttc
atgctccatcagatcaggaagatgatcggcctcgctgttgcagtgatgaggaattgtgca
cctgaatcgcttatggatgtggcattaagaaaggatgtaagaatcaacgttccaacggct
cctgaagtcggactatttctagacgaatgccaattcacttcctataataatcaatggaag
gactcacatgagccactgaccatggatgcatatgctgaagaagctgaagattttaaaatg
aagtatatataccctcacatcgcctccatggagcacaaagaaggagccgttgcgctctgg
cttcactcgttgaaccatcgtaactatccagatctcggtttcatggagacaagtgtatgt
gctggtgctcatgagaaacatgttgaaaacttagcagagtaa
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