Zingiber officinale (ginger): 122025690
Help
Entry
122025690 CDS
T08725
Name
(RefSeq) F-box protein SKP2A-like isoform X1
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122025690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122025690
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122025690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_4
LRR_NXF1-5
F-box-like
F-box
LRR_8
Motif
Other DBs
NCBI-GeneID:
122025690
NCBI-ProteinID:
XP_042440468
LinkDB
All DBs
Position
1A:complement(63622854..63625467)
Genome browser
AA seq
348 aa
AA seq
DB search
METDAAVTMDWKDLPAELLRRILSLVDSNGAMQIEVVASCVCTGWRDAIGLTSLSLSWCN
KDMNILVQALVPKFPQLQVLTLRQNYVPQLEDNAVEIVAKYCHELQELDLSKSLRLTDSS
LYALGNGCPYLTKLNISGCSAFGHSALAYLASCCVKLKKMNLCGCVRAATDTALQSISHH
CSQLQSLNLGWCESVTDKGVTSLASGCPDLRDLDLCGCVLITDESVIALANCCLHLRSLD
LYYCQNITDKAMYSLANNSSKSRLGYWQSSSSSSNEEGLMNLNISQCTALTASAVQAVCD
SFPSLHTCLERNSLIISGCLGLTSVHCACAVRAHHAEATVLADHHAPY
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggagacagatgctgcagttacgatggattggaaggaccttcctgcggagctgctgcgg
agaatcctttcgcttgtagacagcaatggcgccatgcagattgaggtggtagcctcatgt
gtttgtactggttggagagatgccatcggacttacgagtctctcattatcatggtgcaac
aaagacatgaacattcttgtgcaggcacttgtgcccaagttcccacagcttcaagttttg
actcttagacaaaattatgttccacaacttgaggacaatgctgttgagatagttgctaaa
tactgtcatgaattgcaggaactagaccttagcaaaagcctaaggctgactgacagctct
ttgtatgcactaggcaacggctgtccttacctaacaaaactaaatattagtggatgttct
gctttcggccactctgcccttgcatatcttgctagttgctgtgtaaaactgaaaaagatg
aatctctgtggatgtgttagagctgcaaccgacacagctttgcagtccatatcgcatcat
tgcagccaattacagtctttgaatttgggttggtgtgaaagtgtcactgataaaggagta
accagtttagcatctggatgccctgatctaagggatttggacttgtgtggctgtgtgctc
attacagatgagagcgtgattgcactagcgaattgttgcctgcacctgagatctctggac
ttgtattactgccagaacatcaccgacaaagctatgtattctctggcaaataacagcagc
aagagccgacttgggtattggcaaagcagcagcagcagcagcaatgaagaagggttgatg
aacctcaacatcagtcagtgcacagccttaacagcttctgcagttcaagctgtgtgtgac
tcattcccatcattgcatacctgccttgagaggaattcgctcatcatcagtggctgtctc
ggcctcacttctgtgcattgtgcctgtgctgttcgtgctcaccatgccgaggcaactgtg
ttagctgatcaccatgctccttactga
DBGET
integrated database retrieval system
