KEGG   Zingiber officinale (ginger): 122026284
Entry
122026284         CDS       T08725                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122026284
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zof03041]
    122026284
Spliceosome [BR:zof03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    122026284
 Complex C
   U5 SnRNP specific factors
    122026284
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_EIPR1 NBCH_WD40 Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd eIF2A Beta-prop_DCAF12 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_Nup120_160 Cytochrom_D1
Other DBs
NCBI-GeneID: 122026284
NCBI-ProteinID: XP_042440885
LinkDB
Position
10A:complement(81658689..81665274)
AA seq 346 aa
MFAPLGENALVISGHRPGTEWATVPHGSFQGQGPGSGGKQRTSSLESPIMLLTGHQSAIY
TMKFNPAGTVVASGSHDRDIFLWYVHGDCKNFMVFRGHKNAILDLQWTTDGTQIISASPD
KTLRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDLRQRGAIQTF
PDKYQITAVSFSDAADKIFTGGLDNDVKVWDLRRNEVIMMLQGHGDMITGMQLSPDGSYL
LTNGMDSTLRVWDMRPYAPQNRCIKIFTGHQHNFEKNLLKCAWSPDGSKVTAGSADRMVY
IWDTTSRRILYKLPGHNGSVNETAFHPTEPIIGSCGSDKQIYLGEL
NT seq 1041 nt   +upstreamnt  +downstreamnt
atgtttgctccgctcggtgagaatgcattggtaatttcaggccataggccaggaacagaa
tgggcaactgttccacatggttcttttcaaggtcaaggcccgggttctggtggaaaacaa
cgcacttcgagtctggagtcaccaataatgctgctcacaggtcaccaaagtgcaatatat
accatgaagtttaacccagcaggaacagtagtagcatctggctcccatgacagagatata
ttcttgtggtatgttcatggagactgcaaaaatttcatggtcttcagagggcataagaat
gctattttagacctccaatggaccactgatggaactcagataatctcagctagccctgac
aagactctgagggcgtgggatgttgaaactggcaaacagatcaagaaaatggccgagcat
tcatcatttgttaactcatgttgtccctcacgaagaggtccacctctcgttgtcagtggt
tcagatgatggaacagccaaactctgggatttgcggcaaagaggtgcaatccagacattt
ccggacaagtaccagattactgcagtaagtttctctgatgcagcagataagatctttact
ggaggattggacaatgatgtgaaagtgtgggatcttcgtcgaaatgaggtaataatgatg
ctacaaggtcatggagacatgataacaggtatgcagctaagtcctgacggttcttacctc
ttgacaaatggcatggattccactcttcgagtttgggatatgcgtccctatgctcctcaa
aaccgttgcattaagatatttactgggcaccaacacaactttgagaagaatttgctcaag
tgtgcctggtcaccggatgggagcaaggttactgcagggagtgcagataggatggtctat
atctgggacactacatcccgtcggattctgtacaaactccctgggcataatggttctgtg
aatgagactgcattccatccaactgaacctatcatcggctcctgtggaagtgacaagcaa
atctaccttggagagctttga

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