Zingiber officinale (ginger): 122026305
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Entry
122026305 CDS
T08725
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122026305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122026305
Enzymes [BR:
zof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122026305
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122026305
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122026305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
Motif
Other DBs
NCBI-GeneID:
122026305
NCBI-ProteinID:
XP_042440907
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Position
10A:complement(2215843..2222249)
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AA seq
594 aa
AA seq
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MLTVLRVHLPSEIPVVGCEITPYVLLRRPDGSISSDEVPESIPFNGCCMRYRWYRNLGDQ
KVPICSVHPTEPATLQCLVCLKEKVPVAKSFHCSPKCFSSAWQHHRSLHERAKKAQTENE
AEEEEVHGRGFGTFTLGLSGAPSSSAPVSIYPITVADKNGESWSEVGVSRTYTPTDEDIN
HVLKFECVVIDAETRASIGNVNTVLTSRVIPAPAPTPRRMIQVNGDLLGQLDVDGRASSG
TFSVLSYNILSDVYATSEPYSYCPTWALSWPYRRQNLLREIVGYHADIICLQEVQNDHFE
EFFAPELDKYGYQSLYKKKTSEVYSGNPNTVDGCATFFRRDRFSHVKKYEVDFNKAAQSL
AEIAIQSSQKKVALSRLIKDNIALIVVLEAKFSNYGTVNPGKRQLICVANTHLNALQEHK
DVKLWQVHTLLKGLEKIAVSADIPMLVCGDFNSVPGSAPHALLANGKIDQLHPDLAVDPL
GIVHPTHKIGHQLPLVSAYSSFARMVGVSSGLEQQRRRMDAATHEPLFTNCTRDFIGTVD
YIFYTADSLSVESLLELLDEENLRKNTAIPSPEWPSDHIALLAEFRCKPTRIRR
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccgttctccgggttcatcttccgtccgaaatccccgtcgtaggatgcgagatc
acaccctatgtcctcttgcggcggccggatggttccatctcgagtgatgaagtacccgag
tctatcccgttcaatggttgctgcatgagatataggtggtacagaaatctaggtgatcag
aaagttcccatatgcagtgtacatccgactgagcctgcaactctacagtgcttggtttgc
ctcaaggagaaagtgcctgttgctaagagttttcattgtagtcctaaatgcttctctagt
gcttggcagcatcatcgttcattgcatgaacgggctaaaaaggcacaaactgaaaatgaa
gctgaggaggaagaggtgcatggacgtggatttggtacttttactctgggtttatctggt
gctccatcaagttctgctccagtatctatatatcctataactgttgctgacaaaaatggg
gaatcctggtctgaagttggtgtttctaggacatacacacccacagatgaagacattaat
catgttctcaagtttgaatgtgtggtgattgatgcagagacaagagcaagtattggaaat
gttaatacagttttgacatcacgagtaattccagcccctgcacctactccacgtcgaatg
attcaagtgaatggagatctcttggggcaattagatgtagacggtcgggcatcttctggg
acattttctgtgctctcgtacaacattctttctgatgtgtatgccacaagtgagccatat
agctactgtccaacttgggccctttcatggccttaccggaggcaaaatttgttacgtgaa
attgttggttaccatgctgatatcatttgtctccaagaggtccaaaatgaccattttgag
gaattctttgccccagaacttgataaatacggatatcaatcactttacaagaaaaaaact
tcggaggtttatagcggcaatccaaatactgttgatggttgtgctacatttttccgcagg
gacaggttttcacatgtcaaaaaatatgaggttgatttcaacaaagctgcacaatctttg
gcagaaattgcaattcaatctagtcaaaagaaagtcgctttaagccgtcttattaaggac
aacattgctttaattgtggtcctggaagcaaaatttagtaactatggcactgttaatcct
ggaaaaagacaactaatttgtgttgcaaacactcatctaaatgcccttcaggagcacaag
gatgttaagctatggcaggttcataccctcttaaaaggtttggagaaaattgctgttagc
gcagatattcctatgctggtttgtggagattttaactctgtaccaggaagtgctcctcat
gccttactggcaaatggaaaaattgatcaattgcatccagacttggctgttgatccgttg
ggaattgtgcatcctacgcacaagataggtcatcagctaccattggttagtgcatactca
tcatttgcaagaatggtgggagtaagctctggattagagcaacaaaggaggagaatggat
gccgcaacacatgagcctttgtttacaaattgtaccagggattttattggcactgttgat
tacatattttacactgctgactcattgtcagtggaatccctgttggagttattagatgag
gaaaacctacgcaagaacactgccattccttctcctgaatggccatctgatcatatagcc
cttctagcagaatttaggtgcaaacctactagaattagacgctaa
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