Zingiber officinale (ginger): 122026333
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Entry
122026333 CDS
T08725
Name
(RefSeq) uncharacterized ATP-dependent helicase C29A10.10c-like
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122026333
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122026333
5.6.2.5 RNA 5'-3' helicase
122026333
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122026333
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
UvrD_C_2
AAA_16
Nup54
Motif
Other DBs
NCBI-GeneID:
122026333
NCBI-ProteinID:
XP_042440940
LinkDB
All DBs
Position
10A:1269584..1294327
Genome browser
AA seq
1355 aa
AA seq
DB search
MYAQERTLFDLNETPKEEANEDDSPIIYQPQKSLILANFTGSNLFSSSEGCHRILTKHAF
PHAPNASVFQPSVRKKKSMKLKEEKSESVQNIAQASVSMATNFEVANKIRMPRLSGGQGG
HVTEREGEWSDMDGNIDGIARISSNKQEILNGEIAEKQIVNEVNEPCAVKTDENSDNNSS
FLGITTDKTGEAIKDLKVDGPVSDNHGSLDCSSRVDVLSDGLEESSDGKPKKVRGVEASH
ALRFANNLIKRPKVDEHKEAMLGKKRARQTVFINVEDARQASSMKTTPRRQTSFSAPIVT
HIIRDTTDAHTPVIDQGTELPNTKDQKQAYIMGNEGSSTIELTDMKSEPNGDVIPRGLTR
PKKLNHECFSETYPQVPSQGSWKQSPDHRQFKSSLLPSQKLPVAQNNTDQKSDTKKIPSL
KRQISSNPQYQDTSVERFLREVTSEKFWHNPEEMELQRVPGHFESVEEYVRVFEPLLFEE
CRAQLYSTYEELQENVTRDAHIMVRVKNVEKRERGWYDVIVLPVHDFKWTFKEGDVAVLT
YPSPGAGRSGRRNNFGANEDGKHESAGRVVGTVRRHFPIDPRDQTGAIIHFYVGDLYDSS
SKFDDYILRKLEPKTTWYLTTLGALATAQREYIALHAFRRLNIQMQTAILKPSPEHFPKY
EEGAPAMPGCFTQNFVDHLHRTFNPPQLAAIQWAAMHTAAGTNNRGTKRQDPWPFTLVQG
PPGTGKTHTVWGMLNVIHLVQYQHYYTALLKKLAPESYKQTTESNLVNVSSGSIDEVLQN
MDQSLLRTLPKLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQ
TRAAQAVSVERRTEQLMQKGHEEVIKWLHDLKGREAELAHQISRLQRELSVAAAAGRSQG
SVGVDPDVLAARDQNRDMLLQYLAAALENRDKVQVEMSRFLILESKFRARTSFNMEDARA
SLEASFTNEAEIVFTTVSSSGRKIFSRLTHGFDMVVIDEAAQASEVAVLPPLSLGSARCV
LVGDPQQLPATVISKAVGTLLYSRSLFERFQQTGCPTLLLSVQYRMHPQIRDFPSRYFYQ
GRLTDSESIANLDVEAYYRDPLLHPYAFYDITHGRESHRGGSVSYQNVHEAQFSLRLYKH
LQNFVKSNGGKKISIGIITPYKLQLKCLQREFQEVLGTEEGKDIYINTVDAFQGQERDVI
IMSCVRASNHGVGFVADIRRMNVALTRARRALWVVGNANALVQSEDWAALIADAKSRKCF
IDMECIPKEFLLIKGSTASPAKVVLNSTRSSKSCSQRQHRLDMPSEPKSGTQSENENKSD
YFPSRNGAFRNIDVMDSQYGSTKWQNPSGVSRRER
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atgtatgctcaggaaaggacactttttgatcttaatgaaactccgaaggaagaggcaaat
gaggatgacagtcctattatttatcagccccagaaatctcttatacttgccaatttcact
ggttcgaatctattttcatcatctgaaggatgtcataggatcctgactaaacatgctttt
ccacatgcaccaaatgcttctgtttttcaaccttctgtaagaaaaaaaaagtcaatgaaa
cttaaagaagaaaaatcagaaagtgtgcaaaatatagcccaagcctcggtatctatggcc
acaaattttgaagttgctaataaaattagaatgcctaggctttcaggtggtcagggtggc
catgtaacagaaagagaaggggagtggtctgatatggatggaaacatagatggtattgca
agaatttcaagcaataagcaggagatactcaatggggaaattgcagaaaagcagattgtt
aatgaagtaaatgagccttgtgctgttaaaactgatgagaacagcgacaacaattctagt
tttcttggaattaccactgacaaaactggtgaagcaataaaagacctgaaagttgatggt
cctgtctctgataaccatggaagtttggattgcagctctagggtagatgtgctgtctgat
ggattggaggaatcttcagatggaaaaccaaaaaaggttagaggagttgaagctagtcat
gctctgagatttgcaaataatcttattaagaggcctaaagttgatgagcacaaggaggca
atgttagggaagaaaagggctagacaaactgtctttattaacgtggaggatgctagacag
gctagttctatgaaaactacgcctaggaggcaaacatctttttcagcaccaattgttacc
catattattagggataccaccgatgctcatactcctgttattgaccagggcactgaattg
cctaatactaaagaccaaaagcaagcatatatcatgggcaatgaaggcagttcaactata
gaattaactgacatgaaaagtgaaccaaatggggatgtaattccaagaggtcttactcgc
cctaagaagctgaaccacgagtgcttttcggaaacatatccacaagttcctagtcagggt
tcttggaagcaatctccagaccacagacaatttaaaagctcccttcttccatctcagaag
cttcctgttgcacaaaacaacacagatcaaaagtcggacaccaaaaaaattccttctttg
aagaggcagatttcaagcaaccctcaataccaagatacatctgttgaacggtttctcagg
gaggttacaagtgagaaattttggcataatccagaagagatggagttacagcgtgtgcct
ggtcatttcgagtctgttgaagagtatgtgagagtatttgagcctttgctttttgaggaa
tgtcgagcacaactgtacagtacctatgaggagcttcaggaaaatgtaacaagggatgca
catataatggttcgtgtaaagaatgttgagaaacgggaaagagggtggtatgatgttatt
gttcttcctgttcatgacttcaaatggacttttaaggaaggtgatgtagcagttttgaca
tacccaagtcctggtgcagggagatctggtaggagaaataattttggtgctaatgaagat
ggtaagcatgagtcagctgggcgcgttgttggtacggtgaggcggcattttcctattgac
ccacgtgaccagactggagccattattcatttttatgttggggacttgtatgattctagt
agcaagtttgatgattatatccttaggaaactggaacccaagaccacttggtatctaacc
actcttggagcccttgctactgctcagcgggaatacatagctcttcatgcttttcgtcgt
cttaacattcagatgcaaacagcaatattgaaacctagtccagaacattttcccaaatac
gaagagggggcacctgctatgcccggctgttttactcaaaattttgtggatcatttgcat
agaacttttaatcctccacagttggcagcaattcagtgggctgctatgcacactgctgca
ggtacaaataacagaggtactaagagacaagatccttggccttttacacttgttcaaggt
ccaccgggaactgggaaaacacacacagtctggggaatgcttaatgtgattcatttagtc
caatatcaacactactacactgcacttctcaagaagcttgcaccagaaagttataagcaa
acaactgagagcaatttggttaatgtcagtagcggatcaatagatgaagtcttgcagaat
atggatcaaagtctcctaagaactctgccaaaactttgtcctaaaccaagaatgctagtc
tgtgctccttcaaatgctgcaacagatgagttgttagcacgtgttcttgatcgcggtttc
attgacggggagatgaaggtttatcgtcccgacgtagctcgggttggagttgattcacaa
acccgtgctgcccaggcagtctctgtcgagcgaagaactgaacaacttatgcagaagggc
catgaagaagtaattaaatggttgcatgatttgaaaggtcgtgaagctgaactggcacat
caaatatctcgtttgcagagagaactcagtgttgcagcagctgctggtaggtcacaagga
tctgtaggtgttgatcctgatgttcttgctgctagggaccaaaaccgtgatatgctacta
cagtatctagctgcagctctagagaacagggacaaagttcaagttgagatgtcgcgcttt
cttattttggaaagcaagtttcgtgccagaactagctttaatatggaagatgctcgagcc
agccttgaagcaagttttaccaatgaagctgaaattgtctttacaactgtgtcaagcagt
ggccgcaagatattttctcgtcttactcatggatttgatatggtggtcatcgatgaggct
gctcaagccagtgaagttgcagtccttccaccactgtcacttggttctgcaagatgtgtt
ttggtaggtgatccacagcaacttcctgcaactgttataagtaaagctgttgggactttg
ctttatagcagaagtctttttgagaggtttcaacaaacaggatgcccgacactgttatta
tccgtacagtatagaatgcaccctcaaatccgtgattttccatcaagatatttctatcaa
ggacgtctgactgacagcgagagcattgccaacttagatgttgaggcttactacagagat
cctctgttacacccctatgccttttacgatattacacatgggagggagtcccatagggga
ggatctgtctcttaccagaatgttcatgaagcccaattttctttgaggttgtacaaacat
ctacaaaactttgtcaaatcaaatggtgggaaaaaaatatccattggcataattacgcct
tataaacttcagttgaagtgcctacaacgagaatttcaggaggttcttggcactgaagaa
ggcaaggacatttatataaacacagttgatgcgtttcagggtcaagagcgtgatgtaatt
ataatgtcatgtgtccgtgcatcaaaccatggagtgggatttgttgccgatattcggcgc
atgaacgttgcacttacgcgagctaggagggcattatgggtggtcggcaatgcaaatgct
ctcgtgcaatctgaagactgggctgctttgatagctgatgctaaatcaagaaagtgtttt
attgacatggaatgtatcccaaaggaattcttgctgataaaaggatccactgcctctcct
gcaaaagtggtcttgaatagcactaggagttcaaaaagttgcagccaaaggcaacatcgg
ttggatatgccttcagaacccaagtctggaacgcagtctgaaaatgaaaataaatccgac
tactttccatcgaggaacggggcctttagaaatatagatgtcatggattctcaatatggc
agtaccaagtggcagaatccttctggggtttctagaagagagagataa
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