Zingiber officinale (ginger): 122026359
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Entry
122026359 CDS
T08725
Name
(RefSeq) replication factor C subunit 1-like isoform X1
KO
K10754
replication factor C subunit 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03410
Base excision repair
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122026359
03410 Base excision repair
122026359
03420 Nucleotide excision repair
122026359
03430 Mismatch repair
122026359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zof03032
]
122026359
03400 DNA repair and recombination proteins [BR:
zof03400
]
122026359
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122026359
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122026359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
RCF1-5-like_lid
Rad17
AAA_5
AAA_30
Gp44_lid
RsgA_GTPase
nSTAND3
Zeta_toxin
AAA_assoc_2
BRCT_2
Sigma54_activ_2
RNA_helicase
RuvB_N
AAA_16
DNAX_ATPase_lid
AAA_18
Motif
Other DBs
NCBI-GeneID:
122026359
NCBI-ProteinID:
XP_042440975
LinkDB
All DBs
Position
10A:complement(18717497..18734741)
Genome browser
AA seq
977 aa
AA seq
DB search
MSSDIRKWFMKQHDKGATASSKPAVASQKTPNSPNTEKPNPVQVTQENSERRKTSKYFAP
SSKEVNPQTIIKEEKVAAKTPSKRKPQKSSEDIAEDSKPTLPKRSKTVDDDHDDFMPSSN
VKKSPKPDKKMKNSSVTQMTKSSHKVGDNLDDEINDKDPETPVKAGGRGKGGRGSGSMTA
GRGRGAGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGQTFVLSGTLDSLEREEAEDLIK
RHGGRITSAVSKKTSFLLADEDVGGRKSSKAKELGIPFLTEDGLFDMIRKSKPAKTPKKE
EQNKKTSEKMHIPYTTSSPSKVEIRNDQASALGRKEVAKGVKPCIYPDKRKTKSGVQSPL
TWTDKYRPKVPADIIGNQSIVKQLHDWLMHWDDQFLHAGQKVKGKKLSDSGSKKAVLLSG
SPGIGKSTSAKLVSQMLGFQAVEVNASDSRGKADTKIVKGVGGNTSNSIKELVSNVALDS
GLDWSKPPKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNY
CLALNFRKPTKQQMAKRLKQIADAEGLQINEIALEELAERVSGDMRMAINQLQYMSISQS
VINYDDIRKRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLIVQEN
YINYRPSSIGRDDNGVKRMNLLALAAESIGDGDIFNVQIRRYRQWQLSQSSSFASCIIPA
ALMHGQRETLEPGERNFNRFGGWLGKNSTTGKNLRLLDDVHMHFLSSQEARLDRETLRLE
YFTLLLKQLTNPLQVMSKEVAVQKVVEFMDAYSLNQEDFDTIVELSKFKGHPNPMDDIQP
AVKSALTKAYKKGSDSRVVRSADLIVLPGLKKAPKKRIAAILEPVGNGLAEENEEAVEDN
EEENSDAEDADDLAASIETEQKPQLDLLSNKPKGMQVQLDLKSNGKSNAKKTPASKSRSS
GPAEKQAQGSGGRKRKR
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccgatataaggaaatggttcatgaagcaacatgacaaaggggctacagcatca
tcaaagcctgctgtggctagtcaaaaaacacctaattctccaaatacagagaaaccgaat
ccggtccaggtaactcaagaaaattcagagagaagaaaaactagcaaatattttgcacct
tcttctaaggaagtgaaccctcagacaattataaaagaagaaaaagtagcagccaaaaca
ccatcaaaaaggaagccccaaaaatctagtgaagatattgcagaggactctaagcctaca
ttgccaaagaggtctaagacagttgatgatgaccatgatgacttcatgccatctagtaat
gttaagaaatctcctaagccagacaagaaaatgaagaatagctcagtaactcagatgact
aagagttctcataaagttggtgataaccttgatgatgagataaatgataaggatcctgaa
actcctgttaaagctggtggaaggggcaaaggtggaagaggttctggatctatgactgca
gggagagggagaggagctggtagaggtgggtttatgaattttggagagaggaaagatcct
ccacacaaaggagagaaggaagttccagaaggtgctcctgattgtttagctggtcagaca
ttcgtcctaagtggcacacttgacagtttggaacgtgaggaggctgaagatctaattaaa
cgccatggtggtaggatcaccagtgctgtcagcaaaaagacgagttttcttttagctgat
gaggatgttggtgggaggaaatcttcaaaagccaaggagctaggtatcccatttctcact
gaggatggattatttgatatgattcggaagtcgaagcctgctaaaacaccaaagaaggaa
gagcaaaataagaaaacctcagaaaagatgcacatcccatatactacaagtagccctagc
aaagttgaaataagaaatgatcaagctagtgctctaggaagaaaagaagttgcaaaaggt
gttaaaccatgcatctaccctgataaacgaaaaactaaatctggtgttcagagtccattg
acgtggactgataaatatcgcccgaaggttccagctgacatcattggcaatcagtcaatt
gttaaacaacttcatgactggttaatgcactgggatgatcaatttttgcatgctggtcaa
aaggtaaaaggaaaaaaactatcagactctggatctaaaaaagctgtccttctaagtgga
tcacctggaattggtaaaagcacttctgcaaagttggttagtcagatgcttggtttccag
gctgttgaggttaatgcaagtgatagtcgtggtaaggcagacaccaaaatcgttaaagga
gttggtggtaatacatcaaattctatcaaagaacttgttagcaatgtggctttggattct
ggcctagactggtcaaagccaccaaaatctgtgttaatcatggatgaggttgatggcatg
tctgctggagatagagggggagtggctgatcttattgctagcataaagatctccaagatt
cctatcatttgcatctgcaatgatcgttacagtcaaaagctaaagagtcttgtcaattat
tgtttggcactcaacttcaggaaacctaccaaacaacagatggctaaaaggttgaagcaa
attgcagatgctgaaggcctccaaattaacgagattgctctcgaagaacttgcagaaaga
gtaagtggagatatgcgtatggcaataaatcaattgcagtacatgagcatctctcagtcg
gtaatcaattatgatgatataagaaagcgccttcttagtagtgcaaaagatgaagatatt
tctccctttacagctgttgacaagctctttggtttcaatggagggaagttgcggatggat
gagagaattgatttaagcatgagtgatcctgacttagttccccttattgttcaggaaaat
tatatcaattatcggccaagttctattggcagggatgacaatggtgttaaaaggatgaat
ttgcttgcactggcagctgaatctattggggatggggatatattcaatgttcaaataaga
agataccgccagtggcagctatcacaatctagttcatttgcatcgtgtataattcctgca
gctctcatgcatgggcagcgggagacccttgagccgggagagcgtaacttcaacagattt
ggtggatggctaggtaaaaattcaacaacgggaaagaatttgagacttctggatgatgtt
catatgcactttctttcatcccaagaagctaggttggatagggaaacattgcggcttgaa
tattttactcttctgttgaagcagcttacaaatcctcttcaagtgatgtctaaggaagtt
gctgttcagaaagttgtagaattcatggatgcttattctttaaatcaagaggattttgat
acaattgtggagctatcaaagtttaaggggcatcctaatccaatggatgacattcaacca
gctgtaaaatctgcactgaccaaagcatacaagaaaggaagtgactcccgggttgtgcgt
tcagcagatttgattgttcttcccggcttgaagaaagctcccaaaaaacgcatagcagca
atcttggaacctgtaggcaatggtttagcggaagagaatgaagaagctgtagaggacaat
gaggaagagaattctgatgcggaagatgctgatgatcttgctgctagcattgagacagag
cagaaaccgcagcttgatcttctaagcaataaaccaaaaggaatgcaagtgcagctcgat
ttgaagagcaacgggaagtcaaacgcgaagaagacacctgctagcaaatcaaggagttca
gggcctgctgagaagcaggcacaaggttctggaggtagaaagaggaagagatga
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