Zingiber officinale (ginger): 122026389
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Entry
122026389 CDS
T08725
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122026389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122026389
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122026389
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_8
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
122026389
NCBI-ProteinID:
XP_042441029
LinkDB
All DBs
Position
10A:complement(1402695..1409496)
Genome browser
AA seq
848 aa
AA seq
DB search
MEAKDSPASPSAAAALAGTTDGPANDEGNLSDAKGLAKEAAFLFQNRRFQECVEVLSQIF
DKKRGDAKVLHNIAVAEYFRDGCTDPRNLLDALNKVKEQSEELAHTCVNQTDSENSCLGY
MVSGSKANSASIHQSAAINSSRVVYAQEFDVSVTMLNIAIILYHIHEYAQSLSVLKKLFQ
NIEPIEEQIALRVCLLLLDVALACEDILQVSDVIQYLEKSLGIARAIGQLDSGSSTQQQS
NQVLKFSITSNVTAPDASTDSTNGNASENALGRTLPDESLEYETLYSTLDTGSENMERPI
SNDNLMLSPDQEASAIDLKLNLHLYKVQLLLLARNPKAAKREIKLAMNIARFRDSSTTLL
LKSQLEYARGNHRKAIKLLTTTSNNRSDQGMLCMFNNNMGCIYQQLGKYHISSLFFSKAL
KCNAAIQSEKSLKLSTFSQEKSLFILYNCGLQYLLCGRPLVAAQCFDKSKPIFYTRPILW
LRFAECCLSVLEKGLLGKCGSSSSEGEVVKVHVAGSGKWRHLVIDDLSSTNRYRKCSGED
GVVIPDGKLRLTLPFARRCLLNALYLLDCTEKSQPTATLSSQEESNQPTSASAKYMSQKN
AVTSDSKASNVASASIPTTNGELRETKGGTLSNMTLQSSISLPEEMCRKERNMIRQAVLA
NLAYVELSLGNPVRALSAAKEILQLPDCSKMYIFLGHVYAAEALCCLNRVREAVEHLSIY
VSEKNEVQLPYSEEDTEKWRIDKSGDAYEYAGTHNGKSAEVQGMIFLKPEAARGALYVNL
AALAAIQGNAEQADMFVNKALSALPDNHRAVLGAIYVDLLLRRTHNAVVKLRQCRHVRFF
PAHLTSSS
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggaagctaaggattcgccagcctctccctcggccgcggcagctctagccgggaccacg
gatgggcctgccaacgacgaagggaatctctccgatgccaaagggcttgccaaggaagct
gctttcttgttccagaaccggcggttccaggagtgcgttgaagtattgagccagattttt
gataaaaagaggggcgatgcgaaggttcttcataacattgctgttgcagaatactttcga
gatggttgcactgatcctaggaatctccttgatgcattaaacaaggttaaagagcaaagt
gaagagcttgcgcatacttgtgtgaaccagaccgactctgagaatagctgcctaggctat
atggtttcagggtctaaagctaatagtgcttcaattcatcaaagtgctgctataaatagc
agtagagttgtctatgcccaagagtttgatgtttcagtaacaatgctgaatattgcaatc
attctctaccatatccatgagtatgcacagtcattatctgttctcaaaaagctgttccag
aatatcgagccaattgaagagcaaatagctctccgtgtatgccttcttctactggatgtt
gcattagcttgtgaagatattttacaagtctcagatgtcattcagtatctggaaaaatct
ttgggtattgctcgtgctattggacaactagatagtggtagcagcactcaacaacagtct
aaccaagtactgaaattttcaattacgagcaatgtcactgctccagatgcctctacggat
tcaactaatggaaatgcttccgaaaatgctttgggaagaactttacctgatgagagtttg
gaatatgagactttatattcgacactggatactggtagcgaaaacatggagaggcccatt
tcaaatgacaatttgatgttgtcacctgatcaagaagcttctgctatcgaccttaagcta
aatttgcatctttacaaggttcaattgctgcttcttgcaagaaacccgaaggctgcaaag
cgtgaaatcaagcttgctatgaacatagcacggtttagagattcatcgacaacacttctt
ttgaaatctcaattggagtatgctcgtggcaaccatcggaaagctataaaacttttgaca
acaacatccaataacaggtctgatcaaggaatgctttgtatgttcaacaacaatatggga
tgcatttatcaacaactcggcaaatatcacatttcaagtttgtttttctccaaggctttg
aaatgtaatgccgctattcaatctgagaagtctctgaaactttccaccttctctcaagaa
aagtcactattcatattgtataattgtggtttgcaatacctactttgtggtagaccattg
gttgcagctcaatgttttgacaagtccaaaccaatattttacaccagacccattctatgg
cttcggtttgcggaatgttgcttgtcagtgctggagaaaggtcttctaggaaagtgtggt
tcttcatcatcagagggtgaagtggttaaggttcatgtagctggatcaggcaagtggagg
cacttggtgatcgatgatctgagctccacaaatagataccgtaagtgctcgggagaggat
ggtgtagtcattccagatggaaaacttagacttacactcccttttgcgcgccggtgttta
ctcaatgctctttatttgttggattgtactgaaaagtcacagccaactgcaactctatca
agtcaagaagagtccaatcagccaacctctgccagtgccaagtatatgagccagaagaat
gcggtgacaagtgattctaaggcatctaatgtagcatctgcctccatacccacgactaat
ggtgaacttagagaaactaaggggggtacgctctcaaatatgacattacaaagctctatt
tcgttgcctgaggaaatgtgtaggaaggaaagaaacatgataaggcaggctgtcctggcc
aacttagcatatgtggagctgagtttaggaaatccagtgcgagcattatctgctgcaaaa
gaaattctgcaactgccagattgctccaaaatgtacatatttctaggccatgtatatgct
gcagaagcactttgctgtctgaatcgagtcagagaagcagttgagcatttgtccatttat
gtttcagaaaagaatgaagttcagttgccttacagtgaagaagacacggagaagtggaga
atagataagagcggggatgcatatgagtatgctggtactcataatgggaaaagtgctgaa
gtccaaggcatgatctttctgaagcctgaagcagctcgtggagcgctctatgtaaatcta
gctgcattggctgcaatacagggaaatgctgagcaagccgatatgtttgtgaacaaagcc
ctgagtgcactgcccgataatcatagagctgtgctcggtgccatctatgttgacctccta
ctgaggagaacacacaatgctgtagttaagttgagacagtgtaggcatgtcagattcttt
cctgctcatctaacgagcagctcatga
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