Zingiber officinale (ginger): 122026405
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Entry
122026405 CDS
T08725
Name
(RefSeq) WD repeat and HMG-box DNA-binding protein 1-like
KO
K11274
chromosome transmission fidelity protein 4
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
122026405
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
122026405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mcl1_mid
WD40_WDHD1_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_WDR19_1st
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_EML
Beta-prop_IFT140_1st
Ctf4_C
WD40_Gbeta
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
eIF2A
NBCH_WD40
Beta-prop_WDR75_1st
Tricorn_2nd
Beta-prop_Vps41
Beta-prop_SPT8
WD_LRWD1
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
122026405
NCBI-ProteinID:
XP_042441070
LinkDB
All DBs
Position
10A:98277106..98281363
Genome browser
AA seq
967 aa
AA seq
DB search
MKRTSLKLREAHKSNGSPAFCSIAWGADGRDLVTASASDPSILIHDASQLSNPAKELRYH
KDGVTALAFSPDYASLASGSIDHSVKIYTLPEGEFQSNITRFTLPIRSLAFNKSGSLLAA
AGDDDGIKLVATIDSAISKVLKGHKGPVTSLSFDPLNEFLASVDSLGTVIYWELQSGKQV
HTLKAIARNCDADPLCINVISWSPSGDTLAVAGLKNDVVMYDRDTAEKLYTLKGDHERPV
CYLAWSPNGKYMATSGLDKQVLIWDVDLRQDIERHKFDERICSFAWKQNGNALAVIDVMC
KFGIWESAVPSCMKSPTEGAAQARDKNERLFDEDDESPSASGSLDDNVDESHDESAPTTR
KRLRKQSASNEVTDADSDGEDALLRQIESRKRHTAKHKKHARYAKEDSASSLNFSMPKMQ
AAFQPGSTPAQLGKRHFLVYNMLGSITTIENEGYSHIEVDFHDTGRGPRVPAMTDYFGFT
MAALNENGSVFSNPCKGENNMSTLMYRPFASWANNSEWSMRLEGEEVKAVALGTGWVAAV
TNLNWLRIFSEGGLQRDILCLNGPVVTAVGYKDNLAIVTHASACLPSGDQMLEVRVLKIS
KRTEVIKCCLPLSPSSSLTWFGFSEEGQLSSYDSKGVLRVFSHQYGGTWLPIFSALKARK
SDDENYWIVGLNESKLFCIICKSPETYPTVMPKPVLELLSFSFPLASSDLGASDLESELL
MNQFNLSKTLEKIEELAMAGLNSDALDDEAFNIETAIDRCILRLIASCCNGNKLVRATEL
ANLLILEKSVRGAIKLVTALKLPILAERLNAILEERLLNGFGTSAIPRVSAVDVSLPSGV
IRTEGTILSPSPGLAHLHLSKQVTTEDKTNPVGVKDSCEVTKIEEARSHQTKASTNKLAN
NEANSKSKNLEACRSNGEKPIEVSLEGGKNNAKQPQKPTNPFARKTTKQPQKPINPFAKL
EKADKRC
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaacgtcgctgaagctccgggaggcgcacaagagcaacgggtcgccggcgttc
tgctccatcgcttggggcgccgacggccgcgacctcgtcaccgcctccgcctctgaccct
tccatcctcatccacgacgcttcccagttgtcgaaccccgcgaaggagctccgctaccac
aaggacggagtcacggccctcgccttcagccctgattacgcttccctcgcctccggctcc
atcgatcactccgtcaagatctacacgcttccggaaggagagtttcagagcaacattact
cggttcaccttaccaattagatccctcgcgttcaacaaatctggaagtttgctggctgcg
gctggtgatgacgacggcattaaactggttgcgaccatagatagtgcgatctccaaggtg
cttaagggacataagggacctgtgactagtctatcttttgatccattgaatgagttcttg
gcgtctgtcgattcacttggtactgtcatatattgggagcttcaatcaggaaagcaggtg
cacacgctgaaggccatcgcgcgtaattgcgatgcagatcctttgtgtatcaacgtgata
agctggagcccaagcggtgatactttggctgttgcagggctgaagaatgatgtggtaatg
tatgacagagacacagcggagaaactgtacacactgaaaggtgaccatgaaaggcccgtt
tgctatttggcatggtctcccaatggcaaatacatggcaacttcgggactagacaagcag
gtcttgatatgggatgtggatctcaggcaagatatcgaaagacataaatttgatgaaaga
atctgctccttcgcctggaagcaaaatggaaatgctttagctgttattgatgtaatgtgc
aagtttggcatatgggaatctgccgttccttcatgcatgaagtctccaacagaaggtgct
gcacaggctagagacaaaaatgagcgtttattcgacgaagatgatgaaagcccaagtgct
tctggaagtttggatgataatgttgatgagagtcatgatgaatctgccccaacaaccagg
aaaagattgagaaagcaatctgcatctaatgaggttactgatgcagatagtgatggggag
gatgcactgctgcgccagattgaatctcgaaagagacacactgctaaacacaagaagcat
gctagatatgctaaagaagatagcgcaagttctttgaacttctcaatgccaaaaatgcaa
gcagcctttcaacctggctctactccagcacagctcgggaagcggcatttccttgtctat
aatatgcttggaagtatcactacaattgaaaatgagggatactcccacatagaggttgat
ttccatgatactggaagaggtccaagagttcctgccatgactgattattttggttttaca
atggctgctctgaatgaaaatggaagtgttttttcaaatccatgcaaaggagaaaataac
atgagcactcttatgtatcggcctttcgctagctgggccaataacagtgagtggtcaatg
aggcttgagggagaggaagtgaaggctgtggcacttggaactggctgggtggctgcagta
accaaccttaattggctgcgcatcttcagcgaaggcggtttgcagagagacattctctgc
ctaaatggcccggtggtgactgcagttggttacaaggataacttggccatagtcactcat
gcttcagcttgtctgccttcaggagatcagatgcttgaagttagagtacttaaaatatcg
aaacgaaccgaagtcatcaaatgttgcctaccactaagcccttcttcttctttaacatgg
tttgggttcagtgaggaaggacaattaagttcatatgattctaagggagtgctcagagtt
ttcagccatcagtatggaggcacttggcttccgatcttcagtgctcttaaagctcgcaaa
tctgatgatgaaaattactggatagttggtctgaatgaaagcaaattattctgtatcata
tgcaaatcccccgaaacttatccgacggtgatgcctaaacctgttctcgagctactaagc
ttctcatttcctctcgcgtcttctgaccttggtgcttccgatctcgaaagtgaactctta
atgaatcagttcaatctctcaaagaccctggagaagatcgaagagttggccatggctggt
ctcaatagtgatgcacttgatgatgaggccttcaacatagaaacagccatcgaccgatgc
atattgaggctcattgctagttgttgtaacggtaataagcttgttcgggctactgagttg
gctaatttgctgatcctggagaaatcagtcagaggtgcaatcaaacttgttacggcgctc
aaacttcccatattggcagaacggttgaatgctattctagaggaaagattgttgaatgga
tttggaacttcagccattcctcgggtgtctgcagtcgatgtctcattgccatcgggtgtc
attagaactgagggtacaattttgtctccgtcacccggactagctcacctacacttatcg
aagcaagtaacaacagaagataagactaatcctgttggagtaaaagatagttgtgaagtc
accaaaattgaggaagccagatctcatcagacaaaggcatcaactaacaaactcgcaaac
aatgaagcaaacagcaaaagcaaaaacttggaggcatgcagaagcaatggcgagaagcca
attgaagtcagtttggaaggggggaagaacaatgcaaagcagcctcagaaaccaacaaat
ccttttgctaggaagactacaaagcaacctcaaaaaccaataaacccgtttgctaagctg
gagaaggcagacaagagatgttaa
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