Zingiber officinale (ginger): 122027003
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Entry
122027003 CDS
T08725
Name
(RefSeq) protein transport protein SEC16B homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122027003
Membrane trafficking [BR:
zof04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
122027003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
122027003
NCBI-ProteinID:
XP_042441728
LinkDB
All DBs
Position
10A:complement(95641254..95651062)
Genome browser
AA seq
1391 aa
AA seq
DB search
MSSLSAFQVEDQTDEDFFNNLVDDDFGREGSRPRSNGIVRDFSNLSLDDDIGASVEDPDD
AGLIFESYGLQQSETLQSSDSSKELLASVDCPPSDSSMDQVAPAGSSVVSAVVIEPQSSL
PTQHSGSKGTSVKEVQWSAFSVSDQPFGSVRLESYSEFFAENVDSSSDRLISNSDLNLSP
LGNQVDNLDAHSNSLNFQDSQLFSSATDDNTNIADAQYWESLYPGWKYDAATGQWYQLDG
YDASMNAQNHYDSSRVDSLGDFKESAETTAFNSNVGSSDDLYLQQSSQPVLETIAEKSAT
ATNATTTNSSGGYLENMEFPPNMVFDPQYPGWYYDTNTQQWYALESYATQIPTGVQNEVV
ASNGFSGENFHVYDQVGQPKQSSNGTPESQEFGQHRVPLSSSYSPQQSMLQAAQVGDKQE
MQSFYNPSMPNGSHAAKNVGLQTFKPDVYDDFGSPNGTMIPYNSVNGECKYPNYSKNMPH
SIQDNIPSSFLGNHNSVDYLQHSLQDTKAAYSQFAYSSDKGRSSAGRPAHALVAFGFGGK
LLVVRNATSSSTNIDYGSQGTAAGVISILSLSEVVTNELDASSIGSGTGLDYFNSLCHHH
FPGPLVGGSASTKDINKWLDERISSYDAPVMEFQKGKLLKLLHSLLKISLQNYGKLRSPF
GSDPSLEDVNGPEMEVCNLFASSKTKGAPFGGYDSSAYCLNTIPSESQLQTTAAMVQSLL
VSGKRKEALQSAQEGQLWGPALVLAAQLGEKFYVDTVKKMAQHQFAFGSPLRSLCLLIAG
QPADVFSAKNAVNTLPVPSPMQPTQVQPSGMLDKWEENLAIITANRTKDDELVIMHLGDC
LWKDRGEVAAAHTCYLVAEANIESYNEIARLCLIGADHLKYPRTYATPDAIQRTELYEYS
KVQGNSQFILQPFQPYKIIYAYMLAEVGKISDSLKYCQAASKLLKSSARTSELEMWKSLL
SSLDDRLRTHQQGGYGSSLVPAKLVGKLFTTFDRSIYRMIGASPAPLSHVPSGNVDNKGT
YSNAPKVSNNQSTMVMASLVPSASVETMTEWSNDNDSKAIRHNRSVSEPDFGRTPKQDSS
PDDPQSKATAGGSRFGRIGSQFLQKTMGWVSRSPHQAKLGESNKFYYDEKLKRWVEEGAD
PPADEPHLPPPPTTSFQNGMPDYKISSAFKSDNTINDTFKTDSLADKGRLTDKHLAPLEQ
NSAIPPTPPSQNQFSARGRMGVRSRYVDTFNKGGGGGGANGASTNTFHSPTVPLAKPLIG
ANFFVPMAPATTDEKPTDAAGDNNRDVTTGEDPSEPANREASFSSLPSSASSSMQQLPSM
NSNTPPNNNAHVYGSRAASWNGTYESFNETMAGARLGHGPTIFSPTHSKQSSSSLQQHDT
SVGDDLQEIEL
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctctttctgctttccaagtggaggatcagaccgatgaggatttcttcaacaat
ctcgtggatgacgattttggtagagagggttcgcgacctcgttccaatggaatcgtgaga
gatttttctaatctcagcctcgatgatgatattggtgcctctgtggaggatcctgatgat
gctggattgattttcgaatcatatggtctacaacaaagtgagacattgcagtcttcagat
tcttcaaaggaacttttggcctctgttgactgcccaccttcggattcttctatggaccag
gtagctccagcggggagttcagttgtgagtgctgttgtaattgaaccgcaaagttcattg
cccactcaacattctggatctaagggaaccagtgtaaaagaggtccagtggagtgccttc
agtgtcagcgatcagccatttggcagtgtcaggttggaaagctattccgagttctttgca
gagaatgttgattcatcatctgatagattgatatccaattccgaccttaatctttccccc
ttgggaaatcaagttgacaacttagatgcacattcaaattccttgaattttcaagactcc
caacttttcagttcagctactgatgataacacaaatattgctgatgcacaatactgggag
agtctttaccctggttggaagtatgatgcggccactgggcaatggtatcaattggatggc
tatgatgctagcatgaatgcacaaaatcactatgattcatcaagagtggattcactaggt
gactttaaagaaagtgcagaaactactgctttcaactcaaatgttggtagttcagatgat
ctgtaccttcagcagagttcacagccagtcttggagaccatagctgaaaaaagtgcaact
gctacaaatgcaacaactaccaattcgagtggtggttatctggagaacatggaattccct
cctaacatggtatttgatcctcagtatcctggatggtactatgacaccaacacccaacag
tggtatgccctggagtcatatgctacacagataccaactggagttcagaatgaggttgta
gcttcgaatggcttctcaggtgagaacttccatgtatatgatcaagttggccagcctaaa
caaagttctaatggaaccccggagagccaagagttcggacagcaccgggttcctctatca
agcagctattctcctcagcagagcatgctgcaggctgcacaagttggtgacaagcaggag
atgcagagtttttataatccaagcatgcctaatggttctcatgcagctaagaatgtgggg
cttcagacatttaaacctgatgtttatgatgattttggcagccctaatgggactatgata
ccatacaactctgttaatggggaatgcaaatatccaaattattctaaaaatatgccacat
agcattcaggacaatataccaagcagcttcttaggcaatcataattcagttgactatcta
cagcattcattacaagataccaaagctgcttattcccagttcgcttattcatctgataaa
ggaagatcatcagctggacgacctgcacatgctttggttgcttttggatttggtgggaag
ctcttagttgtgagaaatgctacctcttctagcacaaacatagactatggaagccagggg
actgctgctggtgtgatttctattcttagcttatctgaagttgtgacgaatgaacttgat
gcttccagtattggttcaggcactggattggactacttcaattccttgtgccatcatcat
tttccaggtcctcttgttggtgggagtgcttctacaaaggatataaataaatggttagat
gaaagaatctcgagctatgatgctcctgtgatggagttccagaaaggaaaacttttgaag
ttgctccattcgttgctcaaaatatcattgcaaaattatggcaaacttcgatctcctttt
ggttctgatccatcgctagaggatgttaatggtccagaaatggaagtatgcaatcttttt
gcttcatcaaaaaccaaaggcgctccttttggagggtatgattcatctgcttattgtttg
aatactattccgtcagaaagccaacttcagacaactgctgctatggtgcaaagccttctt
gtttctggtaaaaggaaggaggctctccaatctgcgcaagaaggtcaattatggggccct
gctcttgttctggctgcacagcttggcgagaagttttatgttgacacagtgaagaagatg
gcacagcatcagtttgcatttggatcacctttacgatcactatgtctacttattgctggg
caacctgcagatgtgttttctgcaaagaatgcagttaataccttacccgtgccttcacct
atgcagcctacacaggttcagcccagtgggatgttggataaatgggaagagaatttggca
attataactgcaaacagaacaaaagatgatgaactggtaattatgcatcttggagactgc
ctatggaaggacagaggggaggtagctgctgctcacacttgttacttggttgctgaagca
aatattgagtcatataacgagattgcaagactctgtcttattggtgctgatcacttgaag
tacccaaggacatatgccactcccgatgctattcagagaacagaactgtacgagtattca
aaggtgcaaggaaattctcagtttatcctacaacctttccaaccgtacaagataatttat
gcctacatgctggcagaagttggaaagatttcagattcgttgaagtactgtcaagctgct
tcaaaattgctcaagagttctgctcgtacttctgagcttgaaatgtggaaatcgttgtta
tcctctttagatgacagacttcgtacccaccaacagggtggttatggttcaagtttggtt
cctgcaaaactagttggaaagttgtttactacttttgatagatctatttaccgtatgata
ggtgcatcaccagcacctctttcgcatgtgccttcgggaaacgtagataacaaaggaacc
tattctaatgcccctaaagtatcaaataaccaatcaacaatggtcatggcttctttagtt
ccatcggcgtcagtggagacaatgactgaatggtcaaacgataatgatagcaaagcgatc
aggcacaatagaagtgtttcagagcctgattttggtcgaacccctaaacaggattcaagc
ccagacgatccacaaagcaaagctacagctggtggctcacgttttggacgcattggctca
caatttcttcagaaaaccatggggtgggtgtcaagatcccctcatcaggcaaaactgggt
gaaagcaacaagttctactacgatgaaaagcttaagagatgggtggaagaaggagctgat
cctccagccgacgaaccccacctacccccgcctccgacaacatcattccagaatggtatg
ccagattacaagattagtagtgctttcaagagtgacaacacaatcaacgatactttcaaa
acagatagtctcgccgataagggcaggctaacagataaacatttggctccattggaacaa
aactctgcaattccaccaactccacccagccaaaatcagttctctgcccgtggcagaatg
ggggtcaggtcaaggtacgttgatacattcaacaaaggcggcggaggtggtggagccaat
ggtgcatccacaaacactttccactcacctacagttccattggcaaagccattgattggt
gcaaatttttttgtgcctatggcacccgcaaccaccgatgaaaagccaactgatgcggct
ggtgacaacaatagagatgtcaccactggtgaagatccatctgaaccagcaaatagagaa
gcatccttttcctcactaccttcatcagcttcatcttccatgcaacaacttcctagcatg
aacagtaatacccctccaaacaataatgctcatgtctacggatcgagagcagcatcttgg
aatgggacttatgaatcattcaatgaaaccatggcaggtgcgaggttgggacatggcccc
acaatattctcacccacccatagcaagcaaagcagttcatctttgcagcaacatgatact
tccgtgggggatgaccttcaagaaatagaactctag
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