Zingiber officinale (ginger): 122027409
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Entry
122027409 CDS
T08725
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Module
zof_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122027409
Enzymes [BR:
zof01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
122027409
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122027409
NCBI-ProteinID:
XP_042442292
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Position
10A:complement(40080665..40082372)
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AA seq
401 aa
AA seq
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MLKTRSIALVFIAELNAMSSTITILLLLALVLCSPADAAFNIADYGAKSDGRTDSSQALL
SAWQAACGSTGAATVYVPSGSFLVRRAEFSGPCKSNKIKFQIDGTLVAPSGYGNAGEWLL
FDHVEGVTVYGGTIDGRGSSLWACKAAGHGCPAGAYSLVFRNSRGITISGVTSVNSELYH
MVIDNCDGATIQGVRITAPGNSPNTDGIHVQMSSHVTITGAGIRTGDDCISIGPGSTNLW
IEQVNCGPGHGISIGSLGKGYDEAGVENVTVKTALFTGTQNGLRIKTWGRPSEAFVKGVV
FEHAVMQNVQNPIIIDQNYCNGNRGCPHQSSGVKISEVTYSDIHGSSATQVAVKLLCSPS
NPCTGIGLQDIKLTYGNMPAESSCEHADGSASGYVVPPSCL
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgctcaaaaccagatccatagccttagttttcatagctgaactcaacgcgatgagctcc
accattaccattcttctcctcctcgcactcgtcctctgttctcctgctgacgccgcgttc
aacatcgccgactacggcgccaagtccgatggccggacggactcctcccaggctttgctc
agcgcgtggcaggccgcctgcggctcgaccggcgcggccactgtgtacgtgccgtcgggt
tcattcttggtccggcgagccgaattcagcggcccttgcaagagcaacaagatcaagttt
cagattgacggcaccctcgtcgcgccgtctggctacggcaacgccggcgagtggctcttg
ttcgaccacgtggagggcgtgacggtgtacggcggcaccatcgacggccgcgggtcgtcc
ctgtgggcgtgcaaggccgctggccacggctgccccgccggcgcctactcgctggtgttt
aggaactcgaggggcatcacgatcagcggagtgacttcggtgaacagcgagctgtaccac
atggtgatcgacaactgcgatggcgcaacgatccagggcgtgaggataacggcgccggga
aacagccccaacaccgacggcatccacgtgcagatgtcgagccacgtgaccatcaccgga
gccggcatcagaaccggcgacgactgcatctccatcgggcccggcagcaccaacctctgg
atcgaacaggtcaactgcggccccggccacggcataagtatcgggagtttggggaagggg
tacgatgaggccggagtggagaacgtgacggtgaagacggcgttgttcaccggaacacag
aacgggctgaggataaagacgtgggggcggccgagcgaggcgttcgtcaagggggtggtg
ttcgagcacgcggtgatgcagaatgtgcagaacccgatcatcatcgaccagaactactgc
aacggcaacagaggatgcccccaccagagttcgggggtgaagatcagcgaggtgacgtac
agcgacatccatgggtcgtcggcgacgcaagtggcggtgaagttgttgtgcagcccgagc
aacccgtgcaccggaatcgggttgcaggacatcaagctcacgtatgggaatatgccggcg
gagtcttcgtgcgagcacgccgacggttctgcttccggctacgtggtgccgccgagttgc
ctttga
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