KEGG   Zingiber officinale (ginger): 122027566
Entry
122027566         CDS       T08725                                 
Name
(RefSeq) WD repeat-containing protein RUP2-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
zof  Zingiber officinale (ginger)
Pathway
zof04120  Ubiquitin mediated proteolysis
zof04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    122027566
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    122027566
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:zof04121]
    122027566
Enzymes [BR:zof01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     122027566
Ubiquitin system [BR:zof04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    122027566
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     122027566
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 122027566
NCBI-ProteinID: XP_042442485
LinkDB
Position
10A:19716099..19717488
AA seq 361 aa
MNESPADSSEERAQRHWCFRLSSVVYPAAAAEASDAIGAVEFDPTDRLLATAGIARKIRL
YSLAGLVSSESEPRVYGHATACQVCICAPAKLSSLRWRPGSDGRIIGSGDYDGVVTEYDV
ERSAAVLERDEHGGRRVWSVDYSARGELGASGSDDGTVQLWDPRCGGSGCAAAVMRADGP
VCCVEFDPEGGPWVAAGSADSRAYVFDIRAAAAGPVAALGGHERAVTYARFAQGGSRLVT
SGTDGTHRLWEWEQGRQVREFRGHANARSFVGMSVWRGAGLIGCGSESDEVFVYDLRWAD
PIWVQGFGRRTEARSDQNGFVGAVSWRQLAADGDSGALAAGGTDGTLQVFAARKKAHILT
D
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgaacgaatcccctgccgactcctctgaagagagagctcagcgccactggtgcttccgc
ttgtcgtctgtcgtctacccggcggccgcggcggaggcctccgatgccatcggggcagtc
gagttcgaccccaccgacaggctgttggccaccgccggcatcgctaggaagataaggttg
tacagcctcgccggtttggtttcgtctgaatccgagccgcgcgtatatggccacgccacc
gcctgccaggtctgcatctgcgcgccggcgaagctcagcagcctgcggtggcggcccgga
tccgacggccgcatcatcgggtcgggagactatgacggcgtggtcaccgagtacgatgtg
gagcggagcgcggcggtgctggagcgcgacgagcacggcggccgccgcgtgtggagcgtg
gactactcggcgcgcggagagctcggcgcctccgggtccgacgacggaaccgtgcagctg
tgggacccgcggtgcggcggcagcggatgcgcggccgccgtcatgcgcgccgacggtccg
gtctgctgcgtggagttcgaccccgaaggcgggccgtgggtcgcggcgggcagcgccgac
agccgcgcgtacgtgttcgacatccgtgcggcggcggcgggcccggtggccgcgttgggc
gggcacgagcgggcggtgacgtacgcgcgcttcgcgcagggggggagccgcctggtcacg
tcggggaccgacgggacccaccggctgtgggagtgggagcaggggaggcaggtgcgggaa
ttccgcggccacgcgaacgcccggagcttcgtcggcatgtcagtgtggcgcggcgcgggg
ctcatcggatgcgggtcggagagcgacgaggttttcgtgtacgacctccgctgggcggac
ccgatttgggtgcaaggattcgggcggcggacggaggctaggagcgaccagaacgggttc
gtcggggcggtgagctggaggcagctggcagctgacggcgacagcggcgcgctcgccgcc
ggcgggacggatggaaccttgcaagtgttcgccgcaaggaagaaggcacatattcttacc
gattga

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