Zingiber officinale (ginger): 122027568
Help
Entry
122027568 CDS
T08725
Name
(RefSeq) vacuolar protein sorting-associated protein 36-like
KO
K12190
ESCRT-II complex subunit VPS36
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
122027568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122027568
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
122027568
Membrane trafficking [BR:
zof04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
122027568
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122027568
Exosomal proteins of colorectal cancer cells
122027568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
Voldacs
HAUS6_N
Motif
Other DBs
NCBI-GeneID:
122027568
NCBI-ProteinID:
XP_042442488
LinkDB
All DBs
Position
10A:complement(38950667..38957001)
Genome browser
AA seq
438 aa
AA seq
DB search
MAVNWLPPVSLTASGRPVFLPGEVERCLLPAVDLEPGENPSLSPLLSGLLVLTSHRLLWI
DETSSSGFALPFAAVVHAYPPKKSIRSMFASPRIRIQVSASPDGRVVAGGTRSEMITVVL
RGKNDPDVFYGRLLEVLRSRQWEVSVEAEKRDLESVSAGTSTTTAAARVRMPVVGVSGIL
RKEQELWESTDKSLQEAFQDLNALMSKAKEMVQLAEKMRLKLLSGPSAQGNPNEEEMGSK
QDMQDWLLSVGIASPVTKESAGALYHQQLARELADFVKLPLEKAGGMIALIDVYCLYNRA
RGTALISPEDLLQACTLWEKFDVSVMLRKFDSGVMVIQNKAQRDEEVFARIVSLAQKPEA
LRTGISPSDAALTLGIAPALAKEQLLTAESIGLVCRDVSPDGFRFYINLFREIDTNDIYL
IKKPGPFHAWLSAISLSG
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcggttaattggctgcctccggtatcactcaccgcctccggccgcccggtcttcctc
cctggcgaggtcgagcgctgcctcctccccgccgtcgacctcgagcccggggagaacccc
tccctctctcctctcctctctggactcctcgtcctcacttcccaccgcctcctatggatt
gacgagacctcctcctctggatttgctctccccttcgctgccgtcgtccacgcctacccc
cctaagaagtccatccgcagcatgttcgctagccccaggatccgcatccaggtctcggcg
tcgcctgatgggagggtagtcgcgggcggcactcgatccgagatgattacagtggtgttg
agagggaagaacgatcctgatgtgttctacggccggctattggaggtgctgcgatcgagg
cagtgggaagtttcagtggaggcggaaaagagggatttggaatcagtatcggcgggaact
tcgaccaccacagcggcggctagggtgagaatgccagtggtcggggtatcagggattttg
agaaaagagcaagaattgtgggagagcacagataaaagcttacaggaggccttccaggat
ctcaacgctctgatgagtaaggctaaggaaatggtgcaactggctgagaaaatgaggctg
aagttattatcaggtccaagtgctcagggaaaccctaatgaagaagagatgggttctaag
caagacatgcaagattggcttttaagtgttggtattgcatctccagttacaaaggaatcg
gctggtgctttgtaccatcaacaacttgctcgggagcttgcagattttgttaagctgcca
cttgagaaggctggaggaatgattgcattgatagatgtctattgtctatataatcgtgct
agaggaactgcactgatttcacctgaggatcttctgcaagcttgcaccctttgggagaaa
tttgatgtctctgtaatgcttaggaagtttgatagtggtgtaatggttattcagaataaa
gctcagagggatgaagaggtctttgcaaggatagtttcccttgcacaaaagccagaggca
cttagaacaggaataagcccgagtgacgctgctttgaccttaggaattgcacctgctctt
gccaaagaacaactgctgactgctgaaagcataggccttgtatgcagagatgttagtcct
gatggcttccgtttttatatcaacctcttcagggagattgatacaaatgatatttacttg
ataaaaaaacccggaccttttcatgcatggctatctgccatatctttgtctgggtag
DBGET
integrated database retrieval system
