KEGG   Zingiber officinale (ginger): 122027598
Entry
122027598         CDS       T08725                                 
Name
(RefSeq) bromodomain and WD repeat-containing protein 1-like
  KO
K11797  PH-interacting protein
Organism
zof  Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:zof00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:zof04121]
    122027598
Ubiquitin system [BR:zof04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     122027598
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EML WDR55 Beta-prop_SCAP WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_IFT122_1st Bromodomain Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_HPS5 WD40_MABP1-WDR62_1st Agenet Auxin_resp VPS8_N
Other DBs
NCBI-GeneID: 122027598
NCBI-ProteinID: XP_042442555
LinkDB
Position
1B:11613629..11639427
AA seq 1704 aa
MAPSKCKPPGDETPTTVAPLKFSRRMFEKLNSVDQRMTPEIDIREVYFLIMHFLSSGPCK
RTYEQLRNELLEHKLLPRRYHAWYSRSGAPSGDEDDDGLSLPLCYIKLTQRYPHIEKDHI
LKLLKQLLVNSSPLPAMIGGVSSAAVFPTLMGSGSFSLLASDRDKEIKSSNKLPRYLHWP
HMHAGQVHGLNLREIGGGFTKHCRAPSIRAACYAIAKPSNLVQKMEIIKKLRGHQNAVYC
ATFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNAVVASSANDFI
IRVWHLPDGHPISVLKGHTGAVTAIAFNPRPAAVYQLLSSSDDGTCRIWDARQSNAKPHI
YIPKPLDTLAGKVTDPSPSAGQQTHQILCCAFNANGTVFVTGSSDTYARVWNAYKSNLDD
PEQSNQEMDLLCGHENDVNYVQFSGCAVGSRSSLGDTLKEDNLPKFKNSWFTQDNLVTCS
RDGSAIIWIPRSRRSHGKVGRWTRAYHLRVPMPPMPPQPRGGPRLRCQPTPRGVNMIVWS
LDNRYVLAAIMDCRICVWNASDGSLLHSLIGHEESTFVLDVHPFDPRIAMSAGYDGKLII
WDIWEGMPVRIYETGRFKLVDGKFSPDGISVILSDEVGQIFIIATGQGESQKDAKYDQVW
KFIGSTEKLMQETQLTPHRRNIQDLLCDSGMIPYPEPYQSMYQRRRLGILGIEWRPGSLK
VAVGPTYNASIGDFQALPIVDLEQWVEPLPEIVEAIDWEIENDMQSDDADSEYNLTDEYS
SQAGQESLSSSSCGEAESSAGNSEGDNDGKVGVKRSKRKKHSYEVRFTLPQRIAKKNALT
FFSKLTSVSTDEDHEPDSNFSESESMFPDSKTQSFESERSLKFNLLSGVKKESIKDEYEA
AAIPSEVINKQYSPVSKRRLVLKLPCHVVSGTVISEWPKQDNLSISLPTSNSVVNSHRIP
ESEIAESVSSQNEIPSRHHFLVDHQTSMIKWGEVKQRSSKRPRVGDMVTWAAANTSVDDP
NTAGDNTIGIISGDECRTSISWKPTNEKSNDRYAAGNKGVDATPHLLSLESMSLVQQSSI
YIQESEQVVLPHKCVDIRNESVEAENLNPVNHECKVLNESSEVYELVPNKTVNYFGSKCS
FDVDPQVDETMKTTHPNMWFKTRGSVQEFNSSSLKLKSSVLNSLRSAEDELVSDSPTPTD
QDLDLAADEDEGTNRKSLEPGKSNNISENSEGWTTTNASLSVSHDCLDLKSYPKMYDAVY
KRTKPSKGKESCITDVQVKQETTSDSVDHDEATLLLSGKIRDSHRKKPTGGRAPNHDLSC
SMNNFDNNFFSSLGASTSRGKSASSSCNQFLVDDWKSTSKMPVGLRSVRNRRENYNTTDF
RCMDKKSHQSLRKLSWLLLLEHEECYRYIPQKGDEVAYLIQGHREYIESTATTEVGPWKS
IKGLKAVEFCKVQELEYSTLPGSGDSCCKLTLEFTDPSSCGFKKTFRVTLPELNDPDFLV
ERLRYDASIERNWTHRDKCQVWWKDADGSGGSWWSGRILAVKPKDSEFPDSPWEKYVVQY
KDDSSGQHLHSPWELHDVNTHWEHPSISNETRNALLYYIAKIEQTSIRNQDYHGVQKMNQ
VAQKSNFLNRYPVPLSLEVIKRRLENNYYRTVDAVKHDSDVMISNADTHFIKSAEMKSKI
KRLKESIKRTFSSLTDEKQTKESS
NT seq 5115 nt   +upstreamnt  +downstreamnt
atggctcccagtaaatgcaaacctcctggagatgaaactcctaccactgtggcacctttg
aagttctcaagaagaatgtttgagaagctcaactctgttgaccaaagaatgacgccagaa
attgatattagggaagtttattttttgatcatgcattttttgtcatctgggccatgtaag
aggacatacgagcagctgcggaatgaacttttagagcacaaacttttacctagaaggtac
catgcttggtattcacgttctggtgcaccaagtggtgatgaagatgatgatggcttgtca
ctacctctttgttatatcaagttgactcagaggtatcctcatattgaaaaggatcacata
ttaaagcttttgaaacaattattagttaattcatctcctttgcctgccatgattggagga
gtttcaagtgctgctgtttttcctacgcttatgggatctggttccttctctcttcttgct
tccgacagagataaagagattaaaagctccaataagttgccacgttacttgcattggcca
catatgcatgctggccaagttcatggattaaatttaagagagataggtggtggtttcaca
aaacactgtcgtgctccatcgattcgtgctgcatgttatgcaattgctaaaccatcaaat
ttggtacaaaaaatggagatcataaaaaagttaaggggacatcagaatgctgtctattgt
gctacatttgatcgttctgggcggtatgtaataactgggtcagatgatcgccttgtgaag
atctggtcaatggaaactgcattttgtctagctagttgccgtggacatgaaggtgacatt
actgacctggctgtgagttcaaataatgctgtggtggcatcttctgcaaatgactttatc
attagagtttggcatctacctgatgggcatccaatatcagtgctgaaagggcacactgga
gctgtaactgccatcgcttttaatcccagacctgctgctgtttatcagctactctcatcc
tctgatgatggaacatgtcgtatatgggatgccaggcaatcaaatgcaaagccacacatt
tacatcccaaagcctttagacactttagctggaaaggtcactgatccctctcctagtgct
ggtcaacaaacacatcagatcctttgttgtgcattcaatgctaatgggactgtatttgtt
actggtagctctgacacatatgcccgggtatggaatgcttataagagcaatttggatgac
cctgagcaatcaaaccaggagatggatcttttgtgtggtcacgagaatgatgtcaattat
gtacaatttagtggttgtgctgtggggtctagatcttcccttggtgatactctgaaagaa
gataatctacctaaatttaaaaattcctggttcactcaagacaaccttgttacctgctca
cgtgatggcagtgcaattatttggattccaagatcccgacgatctcatggaaaagttggg
cgctggactcgtgcttatcatcttagagtccctatgccacctatgcctccccaacctcgt
ggtggtcctcgtctaagatgtcagccaactcctcgtggtgttaatatgattgtttggagc
ttggataatagatatgtgcttgctgctatcatggattgtagaatatgtgtctggaatgct
tcagatggtagcttactccattcattgattggccatgaggaatctacatttgttttggat
gtgcacccttttgatccacggatagctatgagtgctggctatgatggaaaactgatcatc
tgggatatatgggagggcatgcctgtgcggatatatgaaactggccgtttcaagttggtt
gatgggaaattctcaccagatggaatttcagttattctctcagatgaagttggtcaaata
tttatcattgcaactggtcagggcgagtcgcaaaaggatgccaaatatgaccaggtgtgg
aaatttattggtagcacagaaaaattaatgcaggagacccaacttacgccacacagaagg
aatattcaggatcttctctgtgattcgggtatgattccatatcctgaaccttaccagagc
atgtatcaaagacgtcgtttaggtattcttggtattgagtggcgccctggttcactgaaa
gttgcagttggtccaacctacaatgctagtattggtgattttcaagcactaccaattgtg
gatctagagcagtgggttgagcctttaccggagattgtggaagctatagattgggaaata
gaaaatgacatgcagagtgatgatgctgattctgaatataatttaactgatgaatattcc
agccaagccggtcaagaaagtttgagcagcagttcatgtggggaagcagaaagcagtgcc
ggaaatagtgaaggcgataatgatggaaaggtaggcgttaagagatctaaaaggaaaaag
cactcatacgaagtaagattcactttgccacagagaattgctaagaaaaatgctcttact
ttcttctctaaattaacaagtgtttctacagatgaagatcatgaaccagacagtaatttc
tctgaaagtgaatcaatgttcccagattcaaagacccaaagtttcgagtctgaaagatca
ctgaaatttaatctgcttagtggggtgaagaaggagagcatcaaagatgagtatgaagcc
gctgcaataccttctgaagtcatcaataaacagtatagtccagtaagcaagaggaggttg
gtccttaagctgccatgccatgttgtctctggaactgtgatatctgagtggcccaaacag
gataatttgtctatatccttgcccacaagtaattctgttgtcaatagccatcgtatacct
gaaagtgagatagctgaatcagtcagctcgcagaatgagattccctcccgccatcatttc
ttggtggatcaccagaccagtatgattaaatggggagaagttaagcagcgctcttcaaaa
cgcccaagagttggtgacatggttacatgggctgctgcaaatacaagtgtagatgaccct
aacacagctggagacaacactattggaattatatctggggacgagtgtcggacctcgatt
tcttggaaaccaactaatgagaaaagcaatgacagatatgcagcaggaaacaaaggagtg
gatgccaccccacatctgctttctcttgaaagtatgtctttggttcagcaatcatcaatt
tatattcaagagtcagaacaggtggtgcttccacataagtgtgttgacattagaaatgaa
tctgttgaagcagagaacttaaatcctgttaaccatgaatgcaaggttctaaatgaatca
tctgaagtatatgaactggttccaaataaaactgtcaattattttggcagcaagtgtagt
tttgatgtggaccctcaggtagatgaaactatgaagaccactcacccaaatatgtggttc
aaaacacgaggatcagtacaagagtttaatagttcatccttgaagttaaaatcttcagta
ctgaacagtttgagaagtgcagaggatgagcttgtctcagacagtccaactccaactgac
caagatttggatttggcagctgatgaggatgaaggaaccaacagaaagagtttagaacct
ggaaaatctaataatatatcagaaaattcagaaggatggacaaccacaaatgccagtttg
tctgtttcccatgattgcttggacttaaagtcttatccgaaaatgtatgatgctgtttat
aagaggacgaagccatccaagggaaaggaaagttgcataactgatgtccaagttaagcaa
gaaactacttcagattctgttgatcatgatgaagcaacgttgctgttgagtggtaagatt
agagattctcacagaaaaaaacccactggtggaagggctcctaaccatgatctaagctgt
agcatgaataactttgacaataatttttttagttctttaggagcttccacaagcagagga
aagtctgcatctagttcatgtaatcaatttttagttgatgattggaaatcaacatcaaaa
atgcctgttggtttaagatctgtaagaaacagaagggagaactacaatacaactgatttc
agatgtatggataagaaaagccaccaatcgttgcggaagctttcatggcttttattatta
gagcatgaggagtgctatagatatattcctcaaaaaggtgatgaagtggcctatttgata
cagggccatcgtgaatacattgaaagcactgctacaactgaagtaggtccatggaaatca
atcaaaggcttaaaggctgtcgagttttgcaaagtacaagaacttgaatactctacactt
cctggatctggtgatagctgctgcaaactaacccttgaattcacggatccttcgtcttgt
gggttcaagaaaactttccgagtcacattgcctgaactcaatgatcctgactttctcgtg
gaaagattacgctatgatgcttccattgaaaggaattggacccacagagacaagtgccag
gtatggtggaaggatgctgatggatcgggtggaagttggtggagtggtcggatcttagct
gtaaaacctaaagactctgagtttccagatagcccttgggaaaaatatgtagtacagtac
aaggatgattcttctggacagcatttacatagtccttgggaacttcacgatgtcaatact
cattgggagcatccttctattagtaatgaaaccagaaatgcacttttatattatattgcc
aagatagaacagacatcaataagaaatcaggattatcatggtgttcaaaagatgaatcag
gtggctcagaaatcaaatttcttgaacagataccctgttccactttctcttgaagtgata
aagaggagactcgaaaacaactactatcgcaccgtggatgcagtgaagcatgattccgat
gttatgatttccaatgccgatacacacttcatcaaaagtgcggagatgaagtcaaagatc
aaaaggttaaaggaatcgatcaagcgtacattttcttcattgacggatgaaaaacaaaca
aaggagtcttcgtag

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