Zingiber officinale (ginger): 122027738
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Entry
122027738 CDS
T08725
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
122027738
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
122027738
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
122027738
NCBI-ProteinID:
XP_042442681
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Position
10A:complement(89268814..89273677)
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AA seq
646 aa
AA seq
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MMAPIGVSLGVKDGRIMIDNGILQLTLSNPGGLITGIRYNDIDNVLEAHNEERNRGYWDS
VWNEPGGPGIFEVIEGTRFQIITQDDNQVEVSFTRRWDTSLQGKFVPLHIDKRFVVLRGC
SGFYTYAIYEHREGWPDFDMAETRVAFKLRKDKFHYMAIADNRQRIMPMPEDRMPPRGRQ
LAYQEAVLLLDPTNKDLKGEVDDKYQYSCEDKDIRVHGWICSKPHVGFWQITPTDEFRIG
GPVKQELTSHVGPTTLAMFMSAHYAGENLVPKFRNGEYWKKVFGPVFIYLNFSTDDADPQ
VLWEDAKLQAEIEVESWPYQFPASEDFQKSEERGCITGRLLVCDKFMDEDYLDANSAFVG
LALPGEAGSWQTECKGYQFWSRADEAGNFSIKNVRTGEYNLYGWVPGFIGDYRSEITIHV
SSGSQINLGDLIYEPPRDGPTLWEIGIPDRSAAEFFVPDPKPEWVNKLYVDHPDRFRQYG
LWERYTDLYADTDLVYTVGVSDYSKDWFFAHVTRKTDDKDNQYQPTTWQIKFQIDNIDQM
GTYKLRVAIASANFSELQIRFNDSETNPPHFTTRLIGRDNAIARHGIHGLYWLFNVEVQS
IWLVQGDNTIYLTQSRSGSPFRGIMYDYIRMEGPLQQAQQCKLLSD
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgcctatcggcgtgagcttaggagtgaaagatggacggatcatgatagacaat
ggcattctgcaactgaccttgtcaaatcctgggggacttatcactggaatcagatacaat
gacattgataatgtcttagaagctcacaacgaagaacggaaccgaggatattgggattcg
gtgtggaatgaacctgggggtcctggtatattcgaagtaatcgaaggaacccggtttcaa
atcataacccaagacgacaatcaggttgaagtgtcatttacaagaaggtgggacacttca
ctgcagggcaagtttgttcctttacacattgataaaaggtttgtcgtgctccgcggctgc
tcagggttctacacatatgcaatctatgagcaccgagaaggatggcctgattttgatatg
gctgaaactagggtagccttcaagcttaggaaagataagtttcattacatggcaatagca
gataacagacaaaggatcatgccgatgcctgaagatcgcatgcctcctaggggacgacag
ttagcatatcaggaggctgttctcctacttgacccaaccaataaagatttgaaaggagag
gttgatgacaagtaccaatattcttgtgaagacaaagacataagggtccatggatggata
tgttctaaacctcatgttggattttggcaaatcacacctaccgatgagttccgaatagga
gggcctgttaagcaagaactaacatctcatgttggccctacaacccttgctatgtttatg
agtgctcattatgctggagagaatcttgtgcctaagtttaggaatggtgaatactggaag
aaggtttttggtcctgttttcatctaccttaatttttctacagatgatgcagatccacaa
gttctttgggaggatgcaaaacttcaggcagagattgaagtggagagttggccatatcaa
tttccagcttcagaggacttccaaaaaagtgaggaaagaggttgtatcacagggagatta
ctcgtttgcgataagttcatggatgaagactatttggatgcaaattctgcttttgttggt
ttagcattaccaggggaagctgggtcctggcaaacagagtgcaagggatatcaattttgg
agcagagcagacgaagcaggcaatttctctattaaaaatgtgagaacgggagagtataat
ttgtatggatgggttcctggttttatcggagattacagatcagaaatcactatacatgtt
agttcaggtagtcagattaatttaggtgatcttatctatgaacctccaagagatggtcct
acattatgggaaataggtattcctgatcggtctgctgctgagttcttcgttccggatcct
aaacctgaatgggttaacaaactctatgtcgatcatcctgatagatttcgacaatatggc
ttatgggaaagatacactgacctatatgctgatactgatctggtttacactgttggtgtt
agcgactacagcaaagattggttctttgcgcatgttactagaaagactgatgataaagac
aatcaatatcaaccaacaacatggcaaataaagtttcaaatcgacaacatcgatcaaatg
ggaacctataagcttcgtgtggcaattgcatctgctaacttctctgagttacaaattcgt
ttcaatgactcggaaacgaatcctccgcacttcacgacgaggctaattggcagagacaat
gcgattgccagacatggaatccatggcttgtattggttgttcaatgtggaagtgcaaagc
atatggcttgttcaaggggataacacaatctatttaactcaatcgaggtctgggagtcct
tttaggggaatcatgtatgattatattaggatggaaggtcctctccaacaagcacaacaa
tgtaaattattaagtgattaa
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