Zingiber officinale (ginger): 122027975
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Entry
122027975 CDS
T08725
Name
(RefSeq) ubiquitin receptor RAD23b-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03420
Nucleotide excision repair
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122027975
09124 Replication and repair
03420 Nucleotide excision repair
122027975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
zof03051
]
122027975
03400 DNA repair and recombination proteins [BR:
zof03400
]
122027975
Proteasome [BR:
zof03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
122027975
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
122027975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
CUE
UBA_7
Rad60-SLD
TECR_N
UBA_RAD5A
Ubiquitin_2
Ubiquitin_4
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
122027975
NCBI-ProteinID:
XP_042442920
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Position
10A:96588269..96596365
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AA seq
384 aa
AA seq
DB search
MKLTVKTLKGTHFEIRVQPNDTIIAVKKNIEQVQGKDNYPWGQQLLIHNGKVLKDETTLE
ENKVREDGFLVVMLSKSKAASTSGASPAQPSATSVVQHPALKDAPSQAPSQVPSEVPAQP
IVADNSSNAPARSQGPNADLSDAQAASNLVEGSNMEQTIDQLLEMGGGNWDRETILRALR
AAYNNPERAVEYLYSGIPITAEIALPGDHFPSSVVSSQGADTADVAAAGPLFGVPNSSPL
NMFPQGNTNSEGGAGGGSLDFLRNNQQFLEFRAMVHANPQILQPMLQELSKQNPQLLRLI
QEHHEEFLQLMNEPIEGLEGDLFDQPDQDEMPHTISVTPEEQAAMERLEALGFDRARVIE
AFLACDRNEELAANYLLEHYGEED
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgacggtgaagacgctcaagggcacccacttcgaaatccgagttcagcccaat
gatacgattatagctgtgaagaagaacatcgagcaagtacaagggaaagataactatcca
tggggacagcagttgctaattcacaatggaaaagttttgaaggatgaaaccacacttgaa
gagaacaaagttcgggaagatggttttcttgttgtcatgcttagcaagagtaaagctgca
agcaccagtggagcttcccctgctcagccatcggcaacatctgtagtccagcaccctgca
cttaaagatgctccctcacaagctccatcacaagtgccatcagaagttccagcacaaccc
atcgtggcagataattcatcaaatgcaccagctagatctcaaggcccaaatgcagatctg
tctgatgcccaagctgcatcaaatttagttgaagggagtaatatggaacaaacgattgac
caattgttggagatgggcggtggcaattgggacagagagacaattttgcgtgcacttcgt
gctgcgtacaacaatcctgaaagagctgtggaatacctatattctggcattccaataaca
gctgaaattgcacttccgggtgatcatttcccttcatctgtggtatcttctcaaggtgct
gatacagctgatgtggctgctgcagggcctctctttggagtaccaaattcctctcctttg
aacatgttccctcagggcaatactaattctgaaggtggtgctggaggtggatctcttgat
ttcctcagaaataaccaacaattcttagaatttagagcaatggttcatgcaaatccacaa
atattgcagccaatgcttcaggaattaagcaaacaaaaccctcaactgttgagattaata
caggagcatcatgaagagtttcttcagttaatgaatgaacctattgaaggtcttgaaggg
gatctgtttgatcaacctgatcaagatgagatgcctcacaccataagtgtgacgcccgaa
gaacaggcggccatggaacgacttgaagcattgggttttgaccgagcacgagttatcgaa
gctttcctagcctgcgacaggaatgaggaattggcagcaaactatttacttgagcattat
ggagaagaagattaa
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