Zingiber officinale (ginger): 122028153
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Entry
122028153 CDS
T08725
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
zof04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122028153
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122028153
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122028153
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122028153
03036 Chromosome and associated proteins [BR:
zof03036
]
122028153
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
122028153
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
122028153
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
122028153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
Beta-prop_IFT122_1st
WD40_WDHD1_1st
Beta-prop_NOL10_N
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR3_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
122028153
NCBI-ProteinID:
XP_042443110
LinkDB
All DBs
Position
10A:complement(29831678..29863992)
Genome browser
AA seq
509 aa
AA seq
DB search
MKGSCDVDVGTTAAESSIPPPLEWKFSQVFGERAAGEELQEVDIISAIEFDKSGDHLATG
DRGGRVVLFERTDVRHNGFRKDLEKQDCPITRHPEFCYMTEFQSHEPEFDYLKSLEIEEK
INKIKWCQTVNNSLFLLSTNHKTIKYWKVQEKKVKKFSETNIDTSENGSIASASITATRF
VPDGAYAERPHSHLSNDFSIPPGGSSLLRLPVATSQETSLIPKCRRIYAHAHDYHINSIS
TNSDCETFISADDLRINLWNLEINNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNLLAY
SSSKGSVRLIDLRQSSLCDNHSKIFEEREAPGSRSFFTEIITSISDIKFAKDGRHLLSRD
YMTLKLWDINMEAGPVATFQVHEHLRPRLCDLYESDSIFDKFDCCLSGDGLHVTTGSYSN
LFRVFGCVPGSNEATTLEASKNPMRLQVQNSKSARSSSLTRVVRRGAESSSDSNGNSYDF
TSKLLHLAWHPTENLIACAVMNSLYMYYA
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaagggaagctgcgacgtggacgttgggactacggcggcggagtcttctattccgcca
ccactggaatggaaattctcgcaggtttttggggagcgggcagcaggcgaggagctccag
gaagttgatattatttcagccattgaatttgacaagtctggagatcatcttgccactggt
gatcgaggagggcgtgttgttttgtttgaaaggacagatgttagacataatggtttccga
aaggacttggagaagcaagattgtccaattactaggcaccctgagttctgctacatgact
gagttccaaagccatgagcctgaatttgattatcttaaaagcttggaaatagaggagaag
attaataagattaaatggtgtcagacagtcaataattctcttttccttctttctacgaat
cacaagactattaagtactggaaagtgcaagaaaagaaagtgaagaagttttctgaaacc
aatatagatacttcagaaaatgggagcattgctagcgcaagtataactgctacaagattt
gttccggatggtgcttatgcagaaagaccccacagccacttgagcaatgacttttccatc
cctcccggaggctcttcgttgcttcgtcttccagtggcgacgagtcaagagacaagcctt
attcctaaatgccgaaggatatatgctcatgcccatgattatcacataaattccatctca
actaacagtgattgtgagacgttcatatcagctgatgatctgcgaataaacctttggaat
ttggaaattaacaatcagagctttaatattgttgatgtgaaacctgcaaatatggaggat
ctaactgaggtgatcacatctgctgagttccatccaacccactgtaacttgctggcttat
agtagttcaaagggctcagtccggcttatagacttgcgacaatcttctttatgtgacaat
cattctaagatatttgaggaacgtgaagctcctggttcaagatctttttttacagaaatc
attacatcaatttcagatattaaatttgcaaaagatggaagacatctccttagtcgtgac
tatatgactcttaagctatgggacataaacatggaagctggtcctgttgcaactttccag
gtccatgaacatttaagacctaggctttgtgatctttatgaaagtgattcaatctttgac
aaatttgattgctgccttagtggtgatgggttgcatgtcacaactggaagttacagcaat
ctttttcgtgtatttggttgtgttcctggcagcaatgaagcaaccactttggaagccagt
aaaaatccaatgaggctgcaagtgcagaactcaaagtccgcaagatctagcagcttaaca
cgggttgttagacgaggagcagaaagttcttcagactctaacggcaactcatatgatttc
acatccaaattactccatttagcttggcacccaacagaaaatttaattgcttgtgctgtg
atgaacagtttgtacatgtattatgcatga
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