Zingiber officinale (ginger): 122028776
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Entry
122028776 CDS
T08725
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122028776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122028776
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122028776
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_8
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
122028776
NCBI-ProteinID:
XP_042443593
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Position
10B:complement(1256770..1263263)
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AA seq
848 aa
AA seq
DB search
MEAKDSPASPSAAAALTGTTDGPANDEGNLSDAKGLAKEAAFLFQNRRFQECVEVLSQIF
DKKRGDAKVLHNIAVAEYFRDGCTDPRNLLDALNKVKEQSEELAHTCVNQTDSENSCLGY
MVSGSKANSASIHQSVAINSSRVVFAQEFDVSVTMLNIAIILYHIHEYAQSLSVLKKLFQ
NIEPIEEQIALRVCLLLLDVALACEDILQVSDVIQYLEKSLGIARAVGQLDSGSSTQQQP
NQVLKFSITSNVTAPDASTDSTNGNASENALGRTLPDESLEYETLYSTLDTGSENMERPI
SNDNLKLSPDQEASAIDLKLNLHLYKVQLLLLARNPKAAKREIKLAMNIARFRDSSTTLL
LKSQLEYARGNHRKAIKLLTTTSNNRSDQGMLCMFNNNMGCIYQQLGKYHISSLFFSKAL
KCNAAIQSEKSLKLSTFSQEKSLFILYNCGLQYLLCGRPLVAAQCFDKSKPIFYTRPILW
LRFAECCLSVLEKGLLGKCGSSSSEGEVVKVHVAGSGKWRHLVIDDLSSTNRYLKCSGED
GVVIPDGKLRLTLPFARRCLLNALYLLDCTEKSQPTATLSSQEESNQPTSASAKYMSQKN
AVTSDSKASNVASASIPTTNGELRETKGGTLSNMILQSSISLPEEMCRKERNMIRQAVLA
NLAYVELSLGNPVRALSAAKEILQLPDCSKMYIFLGHVYAAEALCCLNRVREAVEHLFIY
VSEKNEVQLPYSEEDTEKWRIDKSGDAYEYAGTHNGKSAEVQGMIFLKPEAARGALYVNL
AALAAIQGNAEQADMFVNKALSALPDNHRAVLGAIYVDLLLRRTHNAVVKLRQCRHVRFF
PAHLTSSS
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggaagctaaggattcgccagcctctccctcggccgcggcggctctaaccgggaccacg
gatgggcctgccaacgacgaagggaatctctccgatgccaaagggcttgccaaggaagct
gctttcttgttccagaaccggcggttccaggagtgcgttgaagtattgagccagattttt
gacaaaaagaggggtgatgcgaaggttcttcataacattgctgttgcagaatactttcga
gatggttgcactgatcctaggaatctccttgatgcattaaacaaggttaaagagcaaagt
gaagagcttgcgcatacttgtgtgaaccagaccgactctgagaatagctgcctaggctat
atggtttcagggtctaaagctaatagtgcttcaattcatcaaagtgttgctataaatagc
agtagagttgtctttgcccaagagtttgatgtttcagtaacaatgctgaatattgcaatc
attctctaccatatccatgagtatgcacagtcattatctgttctcaaaaagctgttccag
aatatcgagccaattgaagagcaaatagctctccgtgtatgccttcttctactggatgtt
gcattagcttgtgaagatattttacaagtctcagatgtcattcagtatctggaaaaatct
ttgggtattgctcgtgctgttggacaactagatagtggtagcagcactcaacaacagcct
aaccaagtactgaaattttcaattacaagcaacgtcactgctccagatgcctctacggat
tcaactaatggaaatgcttccgaaaatgctttgggaagaactttacctgatgagagtttg
gaatatgagacgttatattcgacactggatactggtagcgaaaacatggagaggcccatt
tcaaatgacaatttgaagttgtcacctgatcaagaagcttctgctatcgaccttaagcta
aatttgcatctttacaaggttcaattgctgcttcttgcaagaaacccgaaggctgcaaag
cgtgaaatcaagcttgctatgaacatagcacggtttagagattcatcgacaacacttctt
ttgaaatctcaattggagtatgctcgtggcaaccatcggaaagctataaaacttttgaca
acaacatccaataacaggtctgatcaaggaatgctttgtatgttcaacaacaatatggga
tgcatttatcaacaactcggcaaatatcacatttcaagtttgtttttctctaaggctttg
aaatgtaatgccgctattcaatctgagaagtctctgaaactttccaccttctctcaagaa
aagtcactattcatattgtataattgcggtttgcaatacctactttgtggtagaccattg
gttgcagctcaatgttttgacaagtccaaaccaatattttacaccagacccattctatgg
cttcggtttgcggaatgttgcttgtcagtgctggagaaaggtcttctaggaaagtgtggt
tcttcatcatcagagggtgaagtggttaaggttcatgtagctggatcaggcaagtggagg
cacttggtgatcgatgatctgagctccacaaatagataccttaagtgctcgggagaggat
ggtgtagtcattccagatggaaaacttagacttacactcccttttgcgcgccggtgttta
ctcaatgctctttatttgttggattgtactgaaaagtcacagccaactgcaactctatca
agtcaagaagagtccaatcagccaacctctgccagtgccaagtatatgagccagaagaat
gcggtgacaagtgattctaaggcatctaatgtagcatctgcctccatacccacgactaat
ggtgaacttagagaaactaaggggggtacactctcaaatatgatattacaaagctctatt
tcgttgcctgaggaaatgtgtaggaaggaaagaaacatgataaggcaggctgtcctggcc
aacttagcatatgtggagctgagtttaggaaatccagtgcgagcattatctgctgcaaaa
gaaattctgcaactgccagattgctccaaaatgtacatatttctaggccatgtatatgct
gcagaagcactttgctgtctgaatcgagtcagagaagcagttgagcatttgttcatttat
gtttcagaaaagaatgaagtccagttgccttacagtgaagaagacacggagaagtggaga
atagataagagcggggatgcatatgagtatgctggtactcataatgggaaaagtgctgaa
gtccaaggcatgatctttctgaagcctgaagcagctcgtggagcgctctatgtaaatcta
gctgcattggctgcaatacagggaaatgctgagcaagccgatatgtttgtgaacaaagcc
ctgagtgcactgcccgataatcatagagctgtgctcggtgccatctatgttgacctccta
ctgaggagaacacacaatgctgtagttaagttgagacagtgtaggcatgtcagattcttt
cctgctcatctaacgagcagctcatga
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