Zingiber officinale (ginger): 122028796
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Entry
122028796 CDS
T08725
Name
(RefSeq) SAC3 family protein B-like isoform X1
KO
K23719
nuclear mRNA export protein SAC3
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122028796
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX-2 complex
122028796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAC3_GANP
Motif
Other DBs
NCBI-GeneID:
122028796
NCBI-ProteinID:
XP_042443633
LinkDB
All DBs
Position
10B:complement(89260014..89268279)
Genome browser
AA seq
1476 aa
AA seq
DB search
MAFQRVKQSASLPTPPQPDISHENKRAASDQVNWLQPSPQKTKVPSPTHSPRNSPVYYTD
SMPRGRSKMVDYSDVYDNGNDGSTRHTHSKVHKRSRSPNQPSTSDLGSSSARPDSRREVQ
AKTRQLTYFRVEPRQPTENLLVSEDQTTENFSMPQTRFKLVDDSYLYDNGEDASANHPQS
RSYKRDRSPNQPSASVLSSSSHQHDSDREIQAKARRLARFGVELSQPTENRVKSKDQSSE
SKLHHTSLDMDTHKLSEKTGSSSRGDSLLQSEGLESSTAVVGLCPDMCPESERAERERKG
DLDSYERLDGERNQTSKYLAVKKYTRTAERDANLIRPMPVLQKTIDYLLSLLNQPYDEDF
LNIYNFLWDRMRAIRMDLRMQHIFNDRAIFMLEQMIRLHIIAMHELCEYSKGEGFSQGFD
AHLNIEQMNKTSVELFHMYDDHRKKGISVSTEKEFRGYYALLKVDKHPGYKVDPMELTRD
LAKMTPEIRRSSEILFARNVARACKMGNYINFFHLARKATYLQACLMHAHFTKIRKKALA
SLHSSLPNNQGIPIADVIRWLGLEGEDVENLLKHHGFELKEFEETYMVKGGPFLNSEEDF
PTKRSQFVLLKKSERVVHDICSSPIIFPVAEKRQTISMELEMFEQRVDASEVDTSKIRSK
DTIHDHGDFTALGAITDPRKTLDVQINDEKMVEAEANTFSHNHSVSGSFQSAFVGGIPYA
VVPMLCKEAVHRQDTVPMTQTVVSPVKMFANGSQAFHQGDPLLNYKCMPIPDVTSVRNIV
PISSIVNKVTSTSQFHQVINREPETKEKLLMPYQTNQAANEKLRLILRKWKQHARKKREI
RVKLKLILRKWKQQATKRRERREQKIMLANSAFNSLFLGPPIRQFKTLPSLAGNELNIDF
AVRERYRKQEESWSTINVSELVAPILSSRNLNARCLCWKLIVLVQPLHMMGQSNGASSRW
LLSKVMGSTNEKSKPVVSVPHLSIWRSWINNQFSACNNCCLTVVREANCDDYNILAKDYL
VDGAASIIFHVSESIPWEMQRVWLHNAIACIPSGSNIPLLIVSGDVYDQGISDPSFTIMQ
KLGLHDADMTRVSLFSVIFICCSLPREKQIGFFQDDKLREGLLWLAKNSPEQPSVNLINT
REVVLQYLLSYAEIVGNANASNFGPNHFISVFNAALDKLVEEIARAASLNRNNWPCPEVD
LLENLSYERCFVNTFLPSIGWSSPVRIQGLTSAINACKLPEFLNDISWLKQSSHTSLEIH
HQKLALEECLESYMSKTCHMLSPEVAAREAGIMVQTSADIELCGSCYYVLPRWSIIFRRI
QNWRLMSLKDMACSVAYLSVQNADNLFAVEYPHDITANLSSSSSVSGVQSMHLLTSKPSF
DEIVENSCDISLPERPIPPAKPSTSSLTANEPTVSILAPTAHQDDDAEKTNYVARDHKYR
LPLAIPLPKLDEHLAKLLQKCSAVQDKIDKKLSVYF
NT seq
4431 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttcaaagagtcaagcagagtgcctccctcccgacccctccgcaacctgatatt
tcccatgagaataaacgagctgcctctgaccaagtgaattggttgcagccatcgccacag
aagacaaaagtaccttctccaacacatagtcccagaaattctcctgtttattacactgat
tcaatgccacgcgggaggtcaaaaatggttgattactctgatgtgtatgataatggaaac
gatggttcaacaaggcatactcattctaaagtgcacaaaaggagtaggtctcccaatcag
ccatccacttctgatttaggttcatcttctgcccgacctgattctaggagagaagttcaa
gcaaagacaagacaattgacctacttcagagtcgagccaagacaaccaacagaaaacctg
ctggtttcagaggaccagactacagaaaatttctctatgcctcaaacaaggtttaaactt
gttgatgattcttacctgtatgataatggagaggatgcttcagccaatcatcctcagtca
agatcatacaaaagggataggtctcccaatcaaccttctgcttcagttttaagttcatct
tctcaccaacatgactctgatagagaaattcaagcaaaggcaagacggttggcccgcttc
ggagtggaactaagccaacctacagaaaaccgggtgaaatcaaaggatcagagttcagaa
agtaaactccaccatacttctttggacatggacactcataaactttctgagaaaacagga
tcatcaagcagaggagatagtttacttcagtctgaaggattagaatcatctacagcggtg
gtgggactatgccccgatatgtgtccagaatcggagagggcagaacgtgagaggaaagga
gatcttgatagctacgaaagacttgatggagagagaaaccaaactagcaagtatcttgct
gtaaagaagtacactaggacagcagagcgtgatgccaacctaattaggcctatgccagta
ttgcagaaaacaattgattatctactaagtttgttgaatcagccgtatgatgaggatttt
ttgaatatttacaattttttgtgggatcggatgcgagcaataaggatggacctcaggatg
cagcatattttcaatgaccgggcaatattcatgcttgagcaaatgattagactccatatt
attgctatgcatgagctgtgtgaatacagtaaaggagagggcttttcccaggggtttgat
gcgcatctaaacattgagcagatgaataagacatctgttgagttatttcatatgtatgat
gatcatagaaagaaaggaattagtgtgtcaactgaaaaggagtttcgtggttattatgcg
ctcctcaaagtagataagcatccaggatacaaagtggatcctatggaactgacacgtgat
cttgctaagatgactcctgaaattagacgttcttccgaaattttgtttgcccgaaatgta
gcaagagcttgtaaaatgggtaattatataaacttctttcatcttgcacgaaaggcaact
tacctacaggcatgcttgatgcatgctcactttactaagataagaaaaaaggcacttgct
tctctacacagtagtcttccaaataatcaaggaatccctatcgcagatgttataagatgg
ctgggcttggagggagaggatgtagaaaatcttttaaaacatcatggatttgaattaaaa
gaatttgaggaaacctatatggtgaagggaggaccttttcttaacagtgaagaggatttc
cctacaaaacgttcacagtttgtgctcctcaagaaatcagagagggttgttcatgatatt
tgttctagtcccattatcttccctgtggctgagaaaagacaaactatatctatggagttg
gagatgtttgaacaaagagttgatgcatctgaagtagatacttcaaaaattagaagcaaa
gacacaattcatgaccatggtgattttactgctcttggggccattactgacccaagaaag
acccttgatgtgcaaattaatgatgaaaaaatggttgaagcagaagcaaatacattctca
cacaatcatagtgtaagtggttcatttcaatctgcatttgttggtgggataccatatgca
gttgttcctatgctttgcaaggaggctgtccatcgccaggatacagttcctatgactcag
accgtggtctctccggtcaaaatgtttgccaatggttcccaggctttccatcaaggagat
ccactcctgaattataaatgtatgcccattccagatgtgacttctgtcaggaacatagta
cctataagttctatagtcaacaaggtcacctctacttcacaatttcatcaagttataaat
agagaaccagaaacaaaagaaaaattgctaatgccttaccagacgaatcaagctgcaaat
gagaagctgagacttattttgaggaaatggaagcaacacgcaagaaaaaagagagaaatt
cgagtgaagcttaagttgatcttgagaaaatggaagcagcaagcaactaaaaggagagaa
agacgtgagcaaaaaattatgctagcaaattcagcatttaattccctatttctgggtcca
cccattcgacaatttaaaacccttccaagccttgccggcaatgagcttaacattgatttt
gctgtaagagagagatataggaaacaagaagaatcatggtcaactattaatgtttcagaa
ttggttgcaccaatattaagttcaagaaatctcaatgctagatgtctttgctggaagctt
attgtacttgtccagccattacacatgatggggcaatctaacggtgcgtcttcaagatgg
ttactctcaaaagttatgggttctactaacgaaaaaagcaaaccagtggtttctgtgccg
catttatcaatatggaggagttggattaacaaccaatttagtgcttgcaacaactgctgc
ttaactgtagttcgcgaggccaattgtgatgattataatatacttgctaaagattatctt
gttgatggggctgcttcaatcattttccatgtatcagagagtattccatgggaaatgcaa
agagtgtggcttcataatgctatagcatgcataccatctggatccaacataccccttttg
atagtaagcggtgatgtgtatgaccaaggaatctctgacccttcattcacaataatgcag
aagcttggccttcatgatgctgatatgacaagggtttctttattttcagttatattcata
tgctgtagcctccccagagagaaacagattggctttttccaggatgataaactgagagag
ggtctcctgtggttagctaagaattcacctgagcaacctagtgttaatcttataaataca
cgagaagttgtcctgcaatatttgttatcttatgcagagatcgtaggaaatgctaacgcc
tctaactttggtccaaaccattttatttcagttttcaatgcagcattggacaaattggta
gaggaaattgcaagagctgcttccttgaataggaataattggccgtgtcctgaggttgat
ctccttgagaatttgagctacgaacgatgttttgtaaataccttcttaccaagcattggc
tggagttcacctgtacgaattcaaggactcactagtgctataaatgcttgtaagttacca
gaatttttgaatgatatttcctggctgaagcaaagttctcatactagcctagagatccat
caccaaaagttggctcttgaagaatgtctggaaagctacatgagcaaaacatgtcacatg
ttgagccctgaagtagctgctagagaggcgggaataatggttcagactagtgctgatatt
gagctttgtggttcttgttactatgtccttccgagatggtctataatattcaggaggatc
cagaattggcgattaatgagtctgaaagatatggcttgctcggtggcatatttgtcggtg
cagaatgcagacaacctttttgctgttgagtatcctcatgacatcactgccaatctatct
tcaagttcaagtgtttcaggagttcaatcaatgcatcttttaacatcaaaaccttctttt
gatgagattgtcgagaatagctgtgatatttcacttccagagcgacctattccacctgcc
aagccttcaacttcatctttaacggctaatgagcccacagtttctattttggctcctaca
gcgcatcaagatgacgatgctgaaaagactaactatgtagcaagggatcacaaatataga
ttaccacttgcaattcctcttcctaagttggatgagcatttagccaaattgttgcaaaaa
tgttcagcagtgcaagacaagatagataaaaagctttcagtttatttttga
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integrated database retrieval system
