KEGG   Zingiber officinale (ginger): 122028799
Entry
122028799         CDS       T08725                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
zof  Zingiber officinale (ginger)
Pathway
zof04142  Lysosome biogenesis
zof04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:zof00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    122028799
   04148 Efferocytosis
    122028799
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:zof04131]
    122028799
Membrane trafficking [BR:zof04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    122028799
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin Beta-prop_WDR5 VPS18_solenoid_2nd WD40_WDHD1_1st Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz WD40 WDR55 Beta-prop_EML_2 zf_RING_Vps8 Beta-prop_WDR36-Utp21_2nd EIF3I zf_RING_Vps8_fungal Vps39_1 Beta-prop_HPS5 Beta-prop_WDR3_2nd Beta-prop_WDR90_POC16_2nd PROPPIN Beta-prop_WDR11_2nd Beta-prop_ACSF4 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR19_1st WDR90_beta-prop_4th
Other DBs
NCBI-GeneID: 122028799
NCBI-ProteinID: XP_042443640
LinkDB
Position
10B:44808602..44840674
AA seq 939 aa
MVSNHPAENGVDGDDEREEDDAEEEEEEMEEEEEPRLKYQRLGGSVPSLLSNDAAASIAV
AERMIALGTHDGTVHILDFQGNQVKEYTSHTATVNDISFDSEGEYVGSCSDDGTVVINGL
FTDEKLKFEYHRPMKTMSLDPDFSRKASRRFVSGGLAGHLFLNMKNWFGYNKQILHDGEG
PIHAVRWRTNLIAWANDAGVKIYDMANNQRIAFIERPRGSPRPELLLPHLVWQADTLLVI
GWGTSVKIAAIKSNQSSGANGMQISLSITSTKYVDIVASFQTSYYISGIAPFGDTLVVLA
YIPEEENGEKDFNSSPPARLGTAQRPVVRIVSWKNEELTTDALPVHGYEHYKAKDYALAH
APFSGSSYAGGQWAAGDEPLYYIVSPKDVVIARPRDAEDHISWLLQHGWHEKALAAVEAG
QGPTELLDEVGSRYLDHLIVERKYAEAASLCPKILRGSASAWERWVFHFAHLRQLPVLVP
YIPIENPQLNDTAYEVALVSLATNPSFHKLLLTTVKSWPHTLYSSTHIISAIEPQINTSS
VTDFLKEALAELYIINTQSEKALALYADLMKPEIFEFIEKHSLYDFIHDKVVELMLLDSK
RAMNLLIQHRDLILPTEIVEQLLETSRKCDKRYLVHLYLHALFEIDPQAGKDFHDLQVAL
YAEYEPKMLLPFLRSSQHYRLEKAYEICMKKELVREQVFIFGRMGNAKQALALIINKLED
MEEAVEFVTMQHDDDLWEELIKQCLRKPEMIGMLLEHTVGNLDPLYIVKKVPDGLEIPRL
RDRLVKIITDYRTETSLRHGCNAILKTDCVNLLIKYYKEARRAVYLGIEEEAVRRKREDD
AASPKTDGSANGVKHMVVKSKTRGSGRCCLCFDPFYIQSISVVVFFCCHGYHVSCLMGAS
GSMSETNNTTDSDDDNSENEDNKSSGSRMRCVLCTTAGH
NT seq 2820 nt   +upstreamnt  +downstreamnt
atggtgtcgaaccaccccgccgagaacggcgtcgatggggatgacgagcgggaggaggat
gacgctgaagaggaagaggaggagatggaggaggaggaggaacccaggctgaagtaccag
cggcttggaggcagcgtgccgtcactcctatccaacgacgccgccgcttccatcgccgtt
gcggagcgtatgatcgccctcggcacccacgacggcaccgttcatatacttgatttccag
ggcaatcaggtcaaagaatatacttcccacacagccaccgtgaatgacattagctttgat
tcagaaggtgaatatgttggtagctgttcagatgatggaactgtagtcataaatggtctc
tttaccgatgaaaaattaaaatttgagtaccatcgcccaatgaagacaatgtctttagac
cctgatttttcacgcaaagcctcaaggagatttgtttctggtgggttggctggtcacctt
tttctgaatatgaagaattggtttggatacaataaacagattcttcatgatggtgaaggt
ccaatacatgctgtcagatggagaacaaacctaattgcttgggcaaatgatgcaggggtg
aaaatttatgacatggccaataatcaacgcattgcttttattgagaggccgagaggaagt
ccacgccctgaacttttacttcctcacttggtctggcaggctgacacactcttggttatt
ggctggggaacatctgttaaaatagcagcgattaagagcaaccaatctagtggagcaaat
gggatgcaaataagtttatccataactagtacaaagtatgtggatattgtagcatctttt
caaactagctactatatatctggcattgctccctttggtgatactctggttgtgcttgct
tacattccggaggaggagaatggagaaaaagacttcaacagtagtccacctgccaggctg
ggaactgcacaaagaccggtggtacgaattgtctcatggaaaaatgaggagctaacaaca
gatgctctgccagtccatggttatgagcattataaagcaaaggattatgcccttgcacat
gctcctttctcaggaagtagctatgctggtggtcagtgggctgctggtgatgaaccttta
tactacatagtatctcccaaggacgttgtaattgcaaggcctagagatgccgaagatcat
atttcttggcttctgcaacatggttggcatgagaaagcattagctgcagttgaagcaggt
caaggaccgacggagcttcttgatgaggtgggttcaagataccttgaccatttgattgtt
gaaaggaagtatgcagaggctgcatctctatgccctaaaatacttcgaggatctgcttca
gcctgggaaagatgggttttccactttgctcatcttcgccaacttccggtcctagttcct
tacataccaattgaaaatccacaactgaatgatactgcttatgaggttgcacttgtttca
ttagctacaaatccatctttccacaaacttctattgacaactgtcaaatcatggccacat
acactgtattcctcaacacatattatatctgctattgaaccacagattaatacatcatct
gtgactgactttctaaaggaggcattagctgagttgtatatcatcaatacacaatctgaa
aaagctcttgcattatatgcggatctaatgaagcctgagatttttgagtttattgaaaag
catagtctatacgactttatacatgataaggttgtggaacttatgctactagacagtaaa
agagccatgaatctcttgatccaacatagggatttaattctgccaactgaaattgttgaa
cagcttttagaaacaagtagaaagtgtgataagagatacctagtgcatttgtacctgcat
gcactgtttgagattgatccacaagctgggaaagattttcatgacttgcaggttgcgctt
tatgcggaatatgaaccaaagatgttactcccatttcttcgcagcagtcagcactataga
ctagaaaaggcatatgagatttgtatgaaaaaagaacttgttagagagcaagtattcatc
tttggaaggatgggaaatgcaaagcaagctcttgctctcatcatcaataagttggaggat
atggaagaggctgtagagtttgtgactatgcagcatgatgatgatctctgggaggagtta
atcaaacagtgtctcagaaaacctgaaatgataggaatgctattggagcacactgttggt
aatcttgatcctttgtatattgtcaaaaaagttccagatggattagagattccaaggttg
agggatcgtcttgtcaaaattataacagattatcgaacagaaacttctttgagacatgga
tgcaatgctatcctcaagactgactgcgtcaaccttttgatcaagtactataaagaagct
cgacgtgcagtctacttaggtattgaagaagaagcagtgcgcaggaaaagggaagatgat
gcagctagcccaaaaactgacggatcagcaaatggtgtaaagcatatggtagtcaagtcc
aaaactaggggaagcgggagatgttgcttgtgctttgatccgttttacattcagagcatt
tcggttgtggttttcttttgttgccatggttaccacgtctcttgccttatgggtgcctct
ggttccatgagtgagacaaataatacaaccgacagtgatgacgataacagtgagaatgag
gataacaaatcgagtggatcccggatgcgatgtgtgttgtgcactacagctggtcattga

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