Zingiber officinale (ginger): 122028799
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Entry
122028799 CDS
T08725
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122028799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122028799
Membrane trafficking [BR:
zof04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
122028799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
WDR55
zf_RING_Vps8
EIF3I
Vps39_1
zf_RING_Vps8_fungal
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
PROPPIN
Beta-prop_WDR11_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
122028799
NCBI-ProteinID:
XP_042443640
LinkDB
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Position
10B:44808602..44840674
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AA seq
939 aa
AA seq
DB search
MVSNHPAENGVDGDDEREEDDAEEEEEEMEEEEEPRLKYQRLGGSVPSLLSNDAAASIAV
AERMIALGTHDGTVHILDFQGNQVKEYTSHTATVNDISFDSEGEYVGSCSDDGTVVINGL
FTDEKLKFEYHRPMKTMSLDPDFSRKASRRFVSGGLAGHLFLNMKNWFGYNKQILHDGEG
PIHAVRWRTNLIAWANDAGVKIYDMANNQRIAFIERPRGSPRPELLLPHLVWQADTLLVI
GWGTSVKIAAIKSNQSSGANGMQISLSITSTKYVDIVASFQTSYYISGIAPFGDTLVVLA
YIPEEENGEKDFNSSPPARLGTAQRPVVRIVSWKNEELTTDALPVHGYEHYKAKDYALAH
APFSGSSYAGGQWAAGDEPLYYIVSPKDVVIARPRDAEDHISWLLQHGWHEKALAAVEAG
QGPTELLDEVGSRYLDHLIVERKYAEAASLCPKILRGSASAWERWVFHFAHLRQLPVLVP
YIPIENPQLNDTAYEVALVSLATNPSFHKLLLTTVKSWPHTLYSSTHIISAIEPQINTSS
VTDFLKEALAELYIINTQSEKALALYADLMKPEIFEFIEKHSLYDFIHDKVVELMLLDSK
RAMNLLIQHRDLILPTEIVEQLLETSRKCDKRYLVHLYLHALFEIDPQAGKDFHDLQVAL
YAEYEPKMLLPFLRSSQHYRLEKAYEICMKKELVREQVFIFGRMGNAKQALALIINKLED
MEEAVEFVTMQHDDDLWEELIKQCLRKPEMIGMLLEHTVGNLDPLYIVKKVPDGLEIPRL
RDRLVKIITDYRTETSLRHGCNAILKTDCVNLLIKYYKEARRAVYLGIEEEAVRRKREDD
AASPKTDGSANGVKHMVVKSKTRGSGRCCLCFDPFYIQSISVVVFFCCHGYHVSCLMGAS
GSMSETNNTTDSDDDNSENEDNKSSGSRMRCVLCTTAGH
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcgaaccaccccgccgagaacggcgtcgatggggatgacgagcgggaggaggat
gacgctgaagaggaagaggaggagatggaggaggaggaggaacccaggctgaagtaccag
cggcttggaggcagcgtgccgtcactcctatccaacgacgccgccgcttccatcgccgtt
gcggagcgtatgatcgccctcggcacccacgacggcaccgttcatatacttgatttccag
ggcaatcaggtcaaagaatatacttcccacacagccaccgtgaatgacattagctttgat
tcagaaggtgaatatgttggtagctgttcagatgatggaactgtagtcataaatggtctc
tttaccgatgaaaaattaaaatttgagtaccatcgcccaatgaagacaatgtctttagac
cctgatttttcacgcaaagcctcaaggagatttgtttctggtgggttggctggtcacctt
tttctgaatatgaagaattggtttggatacaataaacagattcttcatgatggtgaaggt
ccaatacatgctgtcagatggagaacaaacctaattgcttgggcaaatgatgcaggggtg
aaaatttatgacatggccaataatcaacgcattgcttttattgagaggccgagaggaagt
ccacgccctgaacttttacttcctcacttggtctggcaggctgacacactcttggttatt
ggctggggaacatctgttaaaatagcagcgattaagagcaaccaatctagtggagcaaat
gggatgcaaataagtttatccataactagtacaaagtatgtggatattgtagcatctttt
caaactagctactatatatctggcattgctccctttggtgatactctggttgtgcttgct
tacattccggaggaggagaatggagaaaaagacttcaacagtagtccacctgccaggctg
ggaactgcacaaagaccggtggtacgaattgtctcatggaaaaatgaggagctaacaaca
gatgctctgccagtccatggttatgagcattataaagcaaaggattatgcccttgcacat
gctcctttctcaggaagtagctatgctggtggtcagtgggctgctggtgatgaaccttta
tactacatagtatctcccaaggacgttgtaattgcaaggcctagagatgccgaagatcat
atttcttggcttctgcaacatggttggcatgagaaagcattagctgcagttgaagcaggt
caaggaccgacggagcttcttgatgaggtgggttcaagataccttgaccatttgattgtt
gaaaggaagtatgcagaggctgcatctctatgccctaaaatacttcgaggatctgcttca
gcctgggaaagatgggttttccactttgctcatcttcgccaacttccggtcctagttcct
tacataccaattgaaaatccacaactgaatgatactgcttatgaggttgcacttgtttca
ttagctacaaatccatctttccacaaacttctattgacaactgtcaaatcatggccacat
acactgtattcctcaacacatattatatctgctattgaaccacagattaatacatcatct
gtgactgactttctaaaggaggcattagctgagttgtatatcatcaatacacaatctgaa
aaagctcttgcattatatgcggatctaatgaagcctgagatttttgagtttattgaaaag
catagtctatacgactttatacatgataaggttgtggaacttatgctactagacagtaaa
agagccatgaatctcttgatccaacatagggatttaattctgccaactgaaattgttgaa
cagcttttagaaacaagtagaaagtgtgataagagatacctagtgcatttgtacctgcat
gcactgtttgagattgatccacaagctgggaaagattttcatgacttgcaggttgcgctt
tatgcggaatatgaaccaaagatgttactcccatttcttcgcagcagtcagcactataga
ctagaaaaggcatatgagatttgtatgaaaaaagaacttgttagagagcaagtattcatc
tttggaaggatgggaaatgcaaagcaagctcttgctctcatcatcaataagttggaggat
atggaagaggctgtagagtttgtgactatgcagcatgatgatgatctctgggaggagtta
atcaaacagtgtctcagaaaacctgaaatgataggaatgctattggagcacactgttggt
aatcttgatcctttgtatattgtcaaaaaagttccagatggattagagattccaaggttg
agggatcgtcttgtcaaaattataacagattatcgaacagaaacttctttgagacatgga
tgcaatgctatcctcaagactgactgcgtcaaccttttgatcaagtactataaagaagct
cgacgtgcagtctacttaggtattgaagaagaagcagtgcgcaggaaaagggaagatgat
gcagctagcccaaaaactgacggatcagcaaatggtgtaaagcatatggtagtcaagtcc
aaaactaggggaagcgggagatgttgcttgtgctttgatccgttttacattcagagcatt
tcggttgtggttttcttttgttgccatggttaccacgtctcttgccttatgggtgcctct
ggttccatgagtgagacaaataatacaaccgacagtgatgacgataacagtgagaatgag
gataacaaatcgagtggatcccggatgcgatgtgtgttgtgcactacagctggtcattga
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