KEGG   Zingiber officinale (ginger): 122028804
Entry
122028804         CDS       T08725                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    122028804
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zof03021]
    122028804
   03036 Chromosome and associated proteins [BR:zof03036]
    122028804
Transcription machinery [BR:zof03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     122028804
   Coactivators
    SAGA/TFTC/STAGA complex
     122028804
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     122028804
    STAGA complex
     122028804
    TFTC complex
     122028804
    SAGA complex
     122028804
    SLIK complex
     122028804
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_CDC20-Fz WD40_WDHD1_1st TFIID_NTD2 Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_Gbeta Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_EML ANAPC4_WD40 DSE1_N WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_1st CFAP251_N Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_VPS8 Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_NOL10_N PAC11 Beta-prop_WDR19_1st ASA1 Beta-prop_WDR41 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_SPT8 Ge1_WD40 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_IP5PC_F Tricorn_2nd Beta-prop_DCAF12 Beta-prop_RIG_1st PALB2_WD40 DUF7257 Exonuc_VII_S LisH_PAC1
Other DBs
NCBI-GeneID: 122028804
NCBI-ProteinID: XP_042443649
LinkDB
Position
10B:complement(7717717..7732166)
AA seq 654 aa
MEDEEIKKTVVAYLSKKGYTKADLVLQEEQNNVSASPSSDLCVSRVENDPKRYNDGYSKL
RSLAYNSLDLYKHELLSVLYPVYIHCFMDLVAGGLVHEARIFFFAFREDHESRHLRDLQK
LERILSTLNSEEMELARSFRLNKLKIKLCEYSYDLLLQYLQKTHTLTILGIINEHIDFEV
YPGQPTTVADNADFATAEGRNNKFGKQMNQNIRWGALEETEEQHPEKALSDSEKAENGNK
DVNTEKGKKRTFDGMQQGVAVRRIKKDKLVSATGANARSETSAVSAAPRMKPELTLPATP
AEVERVVLEDLRNRVQLNSLALPSINFYTILNAHDRLNCLSVSEGGSLIAGGFSDSSVKV
WDMSEDVQIKKTFNLLGANESVKNENIPGTEDCKRSYTLLHGHSGPVYSVAFSHSGDFLL
SASSDSTIRLWNTKLNANLVCYKGHNFPVWDAQFNPVGDYFASCSHDRTARIWSMERTHP
VRVLAGHLSDVDCVQWHANCNYIATGSSDKTIRLWDVHNGDSVRIFIGHRSMILSLAMSP
DGRYMASGDEDGTIMMWDISSGCCVSPLVGHNSCVWSLAFSCEGTLLASGSADSTVKLWD
VTASTKAPRTENKSSCSHRLRLLKALPTKSTPVYTLQFSRRNLLFAAGAPSRCS
NT seq 1965 nt   +upstreamnt  +downstreamnt
atggaggacgaagagattaagaagacggtggtagcttacctaagcaagaagggctacacg
aaagccgacctcgtccttcaggaagagcagaataacgtctccgcgtctccgagctccgat
ctctgtgtctccagagtagaaaacgatccgaaacgatataatgatggttatagcaagctg
cgttcattggcatataattcgctcgacttatacaagcacgagttgctttctgtactttat
ccagtgtacatacactgttttatggatcttgtggcaggcggacttgtacatgaagctcga
atttttttctttgcattccgtgaagatcatgaatctcgacacttgagagacctacaaaag
cttgaacgaattctttccaccttaaattcagaggagatggaattggcccgttcttttagg
ctgaacaaactaaaaataaaattgtgcgagtattcttatgacctcctcctgcagtacctt
cagaaaacacacactcttaccattcttggcataataaatgagcatattgattttgaagta
taccctggacagcctaccacggttgctgacaatgcagactttgcaactgctgagggtaga
aataacaaatttggcaaacagatgaatcagaatatacgctggggggcacttgaagaaaca
gaagagcaacatcctgagaaggcactttcagattctgagaaggctgaaaatggaaacaaa
gatgtgaatactgaaaaaggcaagaagaggacctttgatggcatgcagcagggtgttgct
gtcagaaggattaaaaaggacaaacttgtgagtgcaacaggggcaaatgcccgctcagag
acaagtgcagtgtctgcagcaccacggatgaaaccagaactaactcttccagcaactcct
gcagaagttgagcgtgtggttttggaggacttacggaaccgagtgcaattaaatagtttg
gcactgccatctattaacttttacaccatcttaaatgcacatgatagattaaattgcttg
tctgtatctgaaggcgggtcgctgattgctggaggattttctgattcatctgtgaaggtc
tgggatatgtcagaggatgtccaaataaagaaaacttttaatctgttgggagcaaatgag
tctgtgaagaatgagaacattcctggaacagaggactgcaaaagatcttacacattgctt
catggtcattcaggacctgtttattctgttgcgtttagtcattctggagacttcctattg
tcagcatcctcagattcgacaatccgattatggaacacaaagctgaatgcaaatcttgtc
tgctacaagggtcataattttccagtatgggatgctcaattcaatcctgttggagactat
tttgctagttgttcacatgatcggactgctagaatttggtcaatggagaggacccatcct
gtaagagtattggctggacatctttctgatgttgattgtgttcagtggcatgcaaattgt
aactacatagcaactggttccagtgacaaaacaatcagattatgggatgtgcataatggg
gacagtgttcgcattttcattggtcatagaagcatgatattatcactagcaatgtctcct
gatggacgatatatggcatctggtgatgaagatggtacaataatgatgtgggatatctca
agtggttgttgtgtttcacctttagtaggacacaactcgtgtgtttggtctctcgctttc
agttgtgaaggcacactacttgcttctggatcagctgattctacagttaaattgtgggat
gtgactgccagtacaaaagctccgagaacagagaacaaatccagttgctctcatcgctta
agattattaaaagctcttccgaccaaatcaactcctgtgtacacattacagttttcaaga
aggaatcttctatttgcagccggtgcaccgtcaagatgttcctga

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