Zingiber officinale (ginger): 122029434
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Entry
122029434 CDS
T08725
Name
(RefSeq) transcription initiation factor TFIID subunit 15b-like isoform X1
KO
K13098
RNA-binding protein FUS
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122029434
09122 Translation
03015 mRNA surveillance pathway
122029434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122029434
Spliceosome [BR:
zof03041
]
Complex A
Other components
Complex A specific factors
122029434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
122029434
NCBI-ProteinID:
XP_042444350
LinkDB
All DBs
Position
10B:complement(32569208..32578242)
Genome browser
AA seq
479 aa
AA seq
DB search
MSGSYGSGGPDDASQPPRGGGYGRGRGGGGGGYNGSQGNRGGGGGYDGGGYQGGDRGNRG
GGGGHRGGGRGGGVGREGDWRCPNSSCGNLNFARRVECNKCGAPCPGGGVGGGGRGGGYG
DSNRGDGGYGDSNRGGDGGSGYNRGGGNYNDGRGGGRDGYNSRGGGYSGARGGRSDYEGR
SADLEGRGGDYGGRGGSFNDNSREREDGGYGQVVPPPSAGYGGPGGAVGNYPTNPYGANN
AYTIDSVTPPSSYGGPNSYPPSYGAPPPNAYPNEGSLARGAPPSSYGAPTSGYGDRGNRG
RAGGGAPPRHGGGAYGAAPTDATGPIKQCDESCGESCDNSRIYISNLPPDVTTDELRDLF
GGIGQVGRIKQKRGYKDQWPWNIKIYTDESGNNKGDAVLSYEDPAAAHSAGGFYNNYDMR
GYKINVGMAEKTAPKAPPSYGHGSGGRGGYGGGDRRRDNHYDGGGPDRHHYSGQRSRPY
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggttcctacggctccggcggacccgatgacgcttcgcagcctcctcgcggcggc
ggttacggacgaggtcgaggaggcggtggcggcggatacaatggaagccaggggaatcga
ggtggaggtggcgggtacgatggaggtggatatcaaggtggagatcgtggaaaccgggga
ggtggaggtggccacagaggtggtggtcgtggtggtggagttggtcgggagggggattgg
cgctgccctaactcaagttgcggaaatctgaacttcgcacgaagagtggaatgcaacaaa
tgtggagctccgtgtcctggcggtggcgttggtggtggtggacgtggtggtggttatggt
gatagtaacagaggtgatggtggttatggtgacagtaacagaggaggtgatggtggcagt
ggttacaatagaggtggtggtaattataatgatggtcgaggtggtggccgtgacggttat
aacagtcgaggtggtggatattctggggctcgtggtggtcgaagtgattatgaaggaaga
agtgcagatttggagggaagaggtggtgactatggtggaagaggtggttcttttaatgac
aatagtcgagagagggaggatggtggttatggtcaagttgtgccacctccttcagctggc
tatggtggtcctggtggtgctgttggaaattaccctactaatccttatggtgcaaataat
gcttatactattgattctgttacacctcctagcagttatggtggccccaattcctaccct
ccttcgtacggtgcaccccctccaaatgcatatcctaatgaaggttctttggctcgtggt
gctccaccatctagctatggcgctcctacatccggatatggtgaccgtggtaaccgtggt
cgtgctggtggtggtgctcctcctcgccacgggggtggtgcatatggtgctgctcctact
gatgctactggtccgatcaaacaatgtgatgaaagttgtggagaatcttgtgataactca
aggatctatatctcaaacttgcctcctgatgtgactacagatgagctacgtgaccttttt
ggagggattgggcaggttggcaggatcaagcaaaaacgtggctacaaagatcagtggcct
tggaatataaagatatatacagatgaatctggaaacaacaaaggagatgctgtactctca
tatgaagatcctgctgctgcacattctgctggaggcttctataataactatgacatgaga
ggatacaagattaatgttggaatggcagagaagactgcacccaaagcacccccttcatat
gggcatggcagtggtggcagagggggctatggtggaggagataggcgcagagacaatcat
tatgatggtggcggacccgataggcatcattacagcggccagcgatctcgaccatattag
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