Zingiber officinale (ginger): 122029443
Help
Entry
122029443 CDS
T08725
Name
(RefSeq) nucleolar protein 6-like isoform X1
KO
K14544
U3 small nucleolar RNA-associated protein 22
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122029443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122029443
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122029443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nrap_D5
Nrap_D4
Nrap_D3
Nrap
Nrap_D2
Nrap_D6
Motif
Other DBs
NCBI-GeneID:
122029443
NCBI-ProteinID:
XP_042444358
LinkDB
All DBs
Position
10B:5256948..5269306
Genome browser
AA seq
1049 aa
AA seq
DB search
MESDSMDFKLGELLKEVQLDDSIVEIVDLAVASVVDAIKSIPERLVRADEASRFIADLGV
PSEKVSFTFRVPESIQVGGSHLISSVAKPDINVDLLVRMPKGCFHEKDYLNHRYHAKRFL
YLRVIEKSLESCSAVKKIAWSSFQNEGRKPVLIIFPVMDSPDLSECFIRIIPTATSLFSM
SRLSLSRNNVRSFSQEDGLAQATPIYNSSILEDMFLEENSEYVQKTFHEWKVLKEALILL
KVWARNRNSLYSHDSLNGYLISMILSHLVVGSGESLIHKSMNVMQIFRVTLKFIATLNLK
GRPLFLHPQGHCNIAKEDLNQLVKSFDTVLLDASCSFNLLFRMTKTAFVELQDEVSWTLK
CIDKCRGGGFEEIFMTKVDFAAKFDSCLRINLKANPKICSGDFCMDNECWRIYEKNVQSL
LQRGLSDRAKLVRVVWRSTPLDWNIEDGLSYFGNEPIIVGILISSQENSFRVVDIGPNPE
NKEEAMKFRKFWGEKAELRRFKDGAIAESTVWECEPWERHLIIKRICDYLISKHLLLSKE
DIVHVVDQLDFCLQVNGKDPVAFSSVLLEAFELLSKRLRLLEDIPLKISSVQPLDPAFRH
TSVFPPQPHPLAYETKYGKKLPKSATTCIPTLEVMIQLEGSGNWPLDSVAIEKTKSAFLL
KIGESLEERWSALCVAAEDEVNILMSGYSFCLRIMHEKGLNMLQTQGVVDKNETFSIDKK
LFMWSQHSSMINGLHGCYPTYGPVVRLAKRWVAAHLFSSFLEEEAVELIVAYLFLKPFPF
HAPCSRVTGFLRFLRFLSCYDWTFSPLIIDINGDLTLKDENEINENFISRGKYYEENKNI
APSMFLAAPYDKTSKAWTRLSPNRSELKRICSYARSSADLLTNLILRGADGPYTWECLFR
TPLNNYDAVVVLHHDKLSTPQHLLFPAVVDFGKLVICGKASNLFLPYTTLDGVQSLEEAR
NKLMVGFDPTRCFLEDLKREFPTTFKIWYDSLGGDVLGLTCDKKDSRKRGRDGADESSIE
LTDALKKVGEVGKGLVKSVHLVKVPKLQQ
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagactctatggatttcaagctcggagagctactgaaagaggtgcaactggat
gattccattgttgaaattgtagacctagcggtcgcttctgttgtagatgccataaagtcg
atccctgagcggttagtgagggccgacgaggcttccagattcatcgcagaccttggcgtg
ccaagtgagaaagtctctttcacgttccgtgtccctgagtccatccaagttggcggaagc
cacttgataagttcggtcgcaaaacctgacattaacgttgatcttttagttcgaatgcct
aagggttgctttcacgagaaagattatttgaaccataggtaccatgcaaagaggttcctt
tatctccgggttatagagaagagcttggaatcatgctctgctgttaagaagattgcatgg
tcaagctttcagaatgaaggccgcaaacctgtattgataatttttccagtaatggactct
ccagatctttctgaatgtttcattcggataattccaactgcaacttctttatttagcatg
tccaggttgagtttgtcgcgaaataatgttcgctcattttcacaagaagatggtcttgcc
caagcaactccaatatacaacagcagcatcttggaagatatgttcttggaggagaactct
gaatatgtgcaaaaaacttttcatgaatggaaagttttgaaggaagcactaattttgctc
aaagtctgggctcggaataggaattccctttattcacatgacagcttaaatggttattta
atatctatgattttgtcgcaccttgttgttgggtctggagaaagccttatacacaagtca
atgaacgtgatgcaaattttccgtgttacactgaaatttattgcaactttaaacttgaaa
ggtagaccacttttccttcaccctcaaggccattgtaatatagcgaaggaggatttgaat
cagctcgtaaaatcctttgatacagtacttcttgatgcatcatgctccttcaacttgttg
tttcgcatgacaaagacagcatttgtggagctgcaggatgaagtatcttggactcttaag
tgtattgacaaatgcagaggtggtggatttgaggagattttcatgacaaaggttgacttt
gctgctaagtttgattcttgcttgaggataaatttgaaagctaatcctaaaatttgttcg
ggagatttttgtatggacaatgaatgttggagaatttacgaaaagaatgtccaatctcta
ctgcaaagagggctaagtgatagagcaaaattagttcgtgtagtatggagaagtacacct
ttagattggaacatagaagatggattgtcatattttggtaatgagccaatcattgtcgga
atattaatcagctctcaagagaacagcttcagagtggttgatattggtccaaacccagaa
aataaagaggaggctatgaagtttagaaaattctggggagaaaaagcagagcttaggaga
tttaaagatggggccattgcagaaagcacagtatgggagtgtgagccatgggagagacat
ttgataattaaaagaatttgtgattacttaatctctaaacatttacttctttctaaggaa
gacatagttcatgttgttgatcagctggatttctgcctgcaagttaatggtaaagatcct
gtagcattttctagtgtgctgctagaggcttttgagcttttgtcaaagcggttgcggctt
ttagaggacattcctctgaaaatatccagtgtgcagccacttgatccagcattcaggcat
acatctgtttttcctccccaacctcatcctctagcttatgaaacaaaatatggcaaaaag
ctgccgaagtcagctacaacatgtattccaacactagaagtcatgattcagttggaggga
tcaggcaattggccgttggattctgtagccattgagaagactaaatctgcatttttgcta
aaaattggagaaagtcttgaggagcgctggagtgcactttgtgttgctgctgaagacgag
gtgaatatacttatgtctggttattcattttgtctcaggattatgcatgagaaaggatta
aacatgttacaaacacaaggtgttgtggataaaaatgagactttttcaatagacaaaaaa
ctttttatgtggagccagcactccagtatgattaatggtttacatggctgctaccctaca
tatggtccagtagttaggcttgcaaaacgttgggttgctgcacaccttttttcttcattt
ttggaagaggaagcagttgaattgatagttgcttaccttttcttgaagccttttcctttt
catgctccatgttcgagggttactggttttctaaggtttttgcggtttctctcatgctat
gattggaccttctctcctttgataattgacataaatggggacttaacactgaaggacgaa
aatgagatcaatgaaaatttcatatcaagaggaaaatattatgaagaaaataaaaatatt
gcaccatccatgttcttagctgctccatatgataaaacatctaaagcctggacaaggttg
tcaccaaaccgatcagagcttaagcgcatatgttcatatgctcgtagcagtgctgacctt
ttgacaaatctcattctacgtggtgccgatggtccttacacatgggagtgtctttttcga
actcctttgaacaactatgatgctgttgttgttctccatcatgataagctttctactccc
cagcaccttctcttcccagctgtggttgacttcgggaagcttgtcatttgtgggaaagca
agcaaccttttccttccttacacgactctcgatggagtacaaagcttggaagaagcaaga
aataaattgatggttggttttgacccaaccagatgttttctggaggatctgaagagagag
ttcccaaccactttcaagatatggtatgattctcttgggggtgatgtacttggcttaacc
tgtgataaaaaggattcaaggaaacgtggccgagatggagcggatgagagcagcattgag
ctaacagacgccctaaagaaagttggggaggttggcaagggtcttgtaaagagtgtacat
cttgtcaaggtacctaaattgcagcagtaa
DBGET
integrated database retrieval system
