Zingiber officinale (ginger): 122029448
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Entry
122029448 CDS
T08725
Name
(RefSeq) replication factor C subunit 1-like isoform X1
KO
K10754
replication factor C subunit 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03410
Base excision repair
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122029448
03410 Base excision repair
122029448
03420 Nucleotide excision repair
122029448
03430 Mismatch repair
122029448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zof03032
]
122029448
03400 DNA repair and recombination proteins [BR:
zof03400
]
122029448
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122029448
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122029448
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
PTCB-BRCT
AAA_22
RCF1-5-like_lid
Rad17
AAA_5
AAA_30
Gp44_lid
RsgA_GTPase
HP_1247_M
BRCT_2
nSTAND3
Zeta_toxin
AAA_assoc_2
RuvB_N
Ig_CMFA_1st
AAA_16
DNAX_ATPase_lid
AAA_18
Motif
Other DBs
NCBI-GeneID:
122029448
NCBI-ProteinID:
XP_042444367
LinkDB
All DBs
Position
10B:complement(8180616..8197042)
Genome browser
AA seq
975 aa
AA seq
DB search
MSSDIRKWFMKQHDKGATASSKPAVASQKTPNSPNTEKPNPVQVTQENSERRKTSKYFAP
SSKEVNPQTIIKEEKVAAKTPSKRKPQKSSEDIAEDSKPTLPKRSKTVDDDHDDFMPSSN
VKKSPKPDKKMKNSSVTEMTKSSHKVGDNLDDEINDKDPETPVKAGGRGKGGRGSGSMTA
GRGRGAGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGQTFVISGTLDSLEREEAEDLIK
RHGGRITSAVSKKTSFLLADEDVGGRKSSKAKELGIPFLTEDGLFDMIRKSKPAKTPKKE
EQNKKTSEKMHILYTTSSPSKVKHDQASALGRKEVAKGVKPCIYPDKRKTKSGVQSPLTW
TDKYRPKVPADIIGNQSIVKQLHDWLMHWDDQFLHAGQKVKGKKLSDSGSKKAVLLSGSP
GIGKSTSAKLVSQMLGFQAVEVNASDSRGKADTKIVKGVGGNTSNSIKELVSNVALDSGL
DWSKPPKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCL
ALNFRKPTKQQMAKRLKQIADAEGLQINEIALEELAERVSGDMRMAINQLQYMSISQLVI
NYDDIRKRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLIVQENYV
NYRPSSIGRDDNGVKRMNLLALAAESIGDGDIFNVQIRRYRQWQLSQSSSFASCIIPAAL
MHGQRETLEPGERNFNRFGGWLGKNSTTGKNLRLLDDVHLHFLSSQEARLDRETLRLEYF
TLLLKQLTDPLKVMSKEVAVQKVVEFMDAYSLNQEDFDTIVELSKFKGHPNPMDDIQPAV
KSALTKAYKKGSDSRVVRSADLIVLPGLKKAPKKRIAAILEPVGNGLAEENEEAVEDNEE
ENSDAEDADDLAVSIETEQKPQLDLLSNKPKGMQVQLDLKSNGKSNAKKTPASKSRSSGS
TEKQAQGSGGRKRKR
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccgatataaggaaatggttcatgaagcagcatgacaaaggggctacagcatca
tcaaagcctgctgtggctagtcaaaaaacacctaattctccaaatacagagaaaccgaat
ccagtccaggtaactcaagaaaattcagagagaagaaaaactagcaaatattttgcacct
tcttctaaggaagtgaaccctcagacaattataaaagaagaaaaagtagcagccaaaaca
ccatcaaaaaggaagccccaaaaatctagtgaagatattgcagaggactctaaacctaca
ttgccaaagaggtctaagacagttgatgatgaccatgatgacttcatgccatctagtaat
gttaagaaatctcctaagccagacaagaaaatgaagaatagctcagtaactgagatgact
aagagttctcataaagttggtgataaccttgatgatgagataaatgataaggatcctgaa
actcctgttaaagctggtggaaggggcaaaggtggaagaggttctggatctatgactgca
gggagagggagaggagctggtagaggtgggtttatgaattttggagagaggaaagatcct
ccacacaaaggagagaaggaagttccagaaggtgctcctgattgtttagctggtcagaca
ttcgtcataagtggcacacttgacagtttggaacgtgaggaggctgaagatctaattaaa
cgccatggtggtaggatcaccagtgctgtcagcaaaaagacgagttttcttttagctgat
gaggatgttggtgggaggaaatcttcaaaagccaaggagctaggtatcccatttctcact
gaggatggattatttgatatgattcggaagtcgaagcctgctaaaacaccaaagaaggaa
gagcaaaataagaaaacctcagaaaagatgcacatcctttatactacaagtagccctagc
aaagtaaaacatgatcaagctagtgctctaggaagaaaagaagttgcaaaaggtgttaaa
ccatgcatctaccctgataaacgaaaaactaaatctggtgttcagagtccattgacgtgg
actgataaatatcgcccgaaggttccagctgacatcattggcaatcagtcaattgttaaa
caacttcatgactggttaatgcactgggatgatcaatttttgcatgctggtcaaaaggta
aaaggaaaaaaactatcagactctggatctaaaaaagctgttcttctaagtggatcacct
ggaattggtaaaagcacttctgcaaagttggttagtcagatgcttggtttccaggctgtt
gaggttaatgcaagtgatagtcgtggtaaggcagacaccaaaatcgttaaaggagttggt
ggtaatacatcaaattctatcaaagaacttgttagcaatgtggctttggattctggccta
gattggtcaaagccaccaaaatctgtgttaatcatggatgaggttgatggcatgtctgct
ggagatagagggggagtggctgatcttattgctagcataaagatctccaagattcctatc
atttgcatctgcaatgatcgttacagtcaaaagctaaagagtcttgtcaattattgcttg
gcactcaacttcaggaaacctaccaaacaacagatggctaaaaggttgaagcaaattgca
gatgctgaaggcctccaaattaacgagattgctctcgaagaacttgcagaaagagtaagt
ggagatatgcgtatggcaataaatcaattgcagtacatgagcatctctcagttggtaatc
aattatgatgatataagaaagcgccttcttagtagtgcaaaagatgaagatatttctccc
tttacagctgttgacaagctctttggtttcaatggagggaagttgcggatggatgagaga
attgatttaagcatgagtgatcctgacttagttccccttattgttcaggaaaattatgtc
aattatcggccaagttctattggcagggatgacaatggtgttaaaaggatgaatttgctt
gcactggcagctgaatctattggggatggggatatattcaatgttcaaataagaagatac
cgccagtggcagctgtcacaatctagttcatttgcatcgtgtataattcctgcggctctc
atgcatgggcagcgggagacccttgagccgggagagcgtaacttcaacagatttggtgga
tggctaggtaaaaattcaacaacgggaaagaatttgagacttctggatgatgttcatttg
cactttctttcatcccaagaagctaggttggatagggaaacattgcggcttgaatatttt
actcttctgttgaagcagcttacagatcctcttaaagtgatgtctaaggaagttgctgtt
cagaaagttgtagaattcatggatgcttattctttaaatcaagaggattttgatacaatt
gtggagctatcaaagtttaaggggcatcctaatccaatggatgacattcaaccagctgta
aaatctgcactgaccaaagcatacaagaaaggaagtgactcccgggttgtgcgttcagca
gatttgattgttcttcctggcttgaagaaagctcccaaaaaacgcatagcagcaatcttg
gaacctgtgggcaatggtttagcggaagagaatgaagaagctgtagaggacaatgaggaa
gagaattctgatgcggaagatgctgatgatcttgctgttagcattgagacagagcagaaa
ccgcagcttgatcttctaagcaataaaccaaaaggaatgcaagtgcagctcgatttgaag
agcaacgggaagtcaaacgcgaagaagacacctgctagcaaatcaaggagttcagggtct
actgagaagcaggcacaaggttctggaggtagaaagaggaagagatga
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