Zingiber officinale (ginger): 122029769
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Entry
122029769 CDS
T08725
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122029769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122029769
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122029769
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Parathyroid
Motif
Other DBs
NCBI-GeneID:
122029769
NCBI-ProteinID:
XP_042444830
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Position
10B:49947880..49982294
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AA seq
315 aa
AA seq
DB search
MNHPSPAFGVGSAAPPPPPPAAHCGAAGRDWRTSVEQFLSDLTDRNLRENALLELSKKRD
IFHDLAPLLWHSFGSIAALLQEIISIYPYLSPPTLSSAASNRVCNALALLQSVASHSETR
VHFLEAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDETEVIGFLLRTEIIPLC
LRTMEMGSELSKTVATFIVQKILLDDVGLSYICATSERFYAVGQVLGSMVTSLAERPSVR
LLKHIIRCYLRLSEHQRACERLINYLPDILKDGSINSYLHDDPGTRHWLQQLLHNVNTAN
RATNHQGRLDHIIGS
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacccatcgcccgcttttggcgtaggttctgccgctccgcctccccctccgcct
gccgcccattgtggcgcagccggtagggattggaggacgtcggtagagcagttcttgtcg
gatctcacagaccggaacctccgtgagaatgcgttgctggagctgtccaagaaaagagac
atatttcatgatttggcacctttattatggcactcttttggatctattgcagcacttctt
caggagataatttctatatacccttatctttctcctccaactttatcatcagcggcatca
aatcgagtttgcaatgctctcgcccttcttcagtctgttgcctcacattctgaaacaaga
gttcatttcctagaggcacatatacctttgtacttgtatccctttttgaatacaactagt
aaaacaaggccattcgagtatctaaggttgaccagcttgggagttatcggtgctcttgtg
aaggtagatgaaactgaggtcattggatttcttctccgaactgagataattccattgtgt
ctgcgcacaatggagatgggtagtgaactctcaaaaaccgttgcaacttttattgtccag
aagatattgttggatgatgtggggcttagctacatttgtgcgacttcagaacgattttac
gctgtaggccaagtccttggatccatggtcacatcacttgctgaaagaccatcagtgaga
ttactgaagcatataattcgttgttacctcaggctttcagagcaccaaagggcatgtgaa
aggttgatcaattatcttcctgatattctaaaagatggttcaattaacagttatcttcat
gatgatcctggaactcgacattggcttcaacaactactacacaatgttaacacagcaaac
cgagcaactaatcatcagggacgacttgatcacattattggaagttag
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