Zingiber officinale (ginger): 122029842
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Entry
122029842 CDS
T08725
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122029842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122029842
03012 Translation factors [BR:
zof03012
]
122029842
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122029842
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122029842
Translation factors [BR:
zof03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122029842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
T2SSE
ATPase
AAA_19
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
122029842
NCBI-ProteinID:
XP_042444907
LinkDB
All DBs
Position
10B:complement(1188984..1199909)
Genome browser
AA seq
1154 aa
AA seq
DB search
MHRGIGYGVGLLLRRERSSATLLNRKSGALSFLLRRSTCERAGGVTSRCCIRWDRGFCGY
AVEQFSDDEYECEFDSQKPSSMANVDEWRWKLSFLLRNPEEQEIISRDKRDRRDYEQISN
LAKRMGLYSELYGKVVVASKVPLPNYRPDIDDKRPQKEVVIPLSLQRRVEGLLQEHVDRV
LLKSNKINSELENNSSSKVVEDVEPNENQEPLVDRSVMEKILQRKSNRMRNLQITWQESH
EGVKMLNFRKSLPSFKEKDRLLSAIAHNQVIVISGETGCGKTTQLPQYVVDSEIEAGRGA
FCNIICTQPRRISAMAVAERVSTERGENLGETVGYKVRLEGIKGKNTHLLFCTSGILLRR
LLGDPNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSSYF
GGAPTIHIPGFTYPVRAHFLEDILEKTGYKLTSFNQIDDYGQEKLWKTQKQLMPRKRKNQ
ITSLVEDALKNSNFEGFSSRARDSLASWTPDCIGFNLIEAVLCYICRKEQAGAVLVFMTG
WDDISCLRDQLRAHPLLGDPNRVLVLACHGSMATSEQKLIFEKPPPNVRKIVLATNMAEA
SITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYP
RCVYDAFAEYQLPELLRTPLNSLCLQIKSLHVGSIGEFLSSALQPPESLAVQNAIEFLKK
IGGLDEQENLTNLGQYLSMLPVDPKLGKMLIMGAIFRCVDPVLTVVAGLSVRDPFLLPQD
KKDLAGTAKLRFSAKDYSDHMALIRAYEGWKEAEREGSAYEFCWRNFLSAQTLQAIHSLR
KQFSFILKDAGLVDADSSVNNSLSYNQSLVRAIICSGLFPGIASVVHREKSMSFKTMDDG
QVLLYANSVNANYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGSLVRGEVPGH
LKMLDGYIDFFMDPSLANYYCSLKMELDKLVLRKLEDPKVDIHKESKYLMLAVQELVSGD
LCEGRFVFGRETRRARFSSKESDKHDFVKNNTNPKSLLQTLLMRAGHAPPRYKTKHLKTN
EFRAIVEFKGMQFVGKPKKSKQFAERDAAIEAMAWLTHTSDKRHQDEGDEDSQIDLTDNM
LKLISKSRRKLRRR
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgtgggatagggtatggtgtcggtttgctcctgaggcgtgagcggtcctcagcg
acactactgaatcgcaagtctggagctttatctttcctcttacggcggtcgacctgcgag
agggctggtggggttacttctcgatgctgcattagatgggataggggtttctgcggctat
gcggtggagcagttctcagacgacgaatatgagtgcgaattcgatagccaaaagccttct
tcaatggctaacgttgatgaatggagatggaaacttagttttcttttacgtaacccggaa
gagcaagagatcatttccagagacaaaagagacaggcgagattatgaacaaatatccaat
cttgcaaaaagaatgggtctctacagtgaactttatggaaaggtggtggttgccagcaag
gttcctctacctaattatagacctgatattgacgataagaggccacaaaaagaagtggtg
attcctcttagcttgcagaggagggtcgagggcctgctgcaagaacatgttgatagggtg
ctgttaaaatctaacaagatcaacagtgaattggaaaacaactcttccagcaaggtggtg
gaagatgttgaaccaaatgaaaaccaagaacctttggtcgataggtcagttatggaaaaa
attctacagagaaagagtaaccgaatgaggaacttgcagataacttggcaggaatcacat
gagggtgtaaagatgctgaattttagaaaatccctcccttcattcaaggagaaggacaga
ttactgtctgctatcgcccacaatcaggtgattgtaatttctggggaaactggctgtggt
aaaaccactcaacttcctcaatatgtagtagattctgagatagaagctggccgtggagca
ttttgtaatatcatttgcactcaaccacgaaggatatctgctatggctgttgcagaaaga
gtttcaactgaaagaggggagaatcttggtgagacagttggttacaaagttcgattagag
ggaattaaaggaaaaaatacacatctgcttttttgtaccagtggcattttgctaagaaga
ttgttgggggacccaaatctgaatggtgtaactcatgtttttgttgacgagattcatgaa
cgaggcatgaatgaagattttttgttgattgtgttaaaggaccttcttccacgccgtcgt
gatttgaggttgattttgatgagtgcaactctgaatgctgaattattttcaagttacttc
ggtggggctccaacaatccatattccaggcttcacctaccctgttagggcacactttctt
gaagatattcttgagaagactggatataagctgacttctttcaaccaaattgatgactat
ggccaagagaaattgtggaagacacagaagcagctaatgccacgtaaaaggaaaaatcag
attacttctcttgttgaggatgctcttaaaaattcaaattttgagggcttcagttccaga
gcacgtgattctttggcctcctggacaccagattgtataggttttaatcttattgaggct
gttctatgttatatatgtcggaaggagcaggcaggtgctgtgcttgtttttatgactggc
tgggacgatattagttgcttgagggatcagctaagggctcatcctctattaggagatcca
aacagggtgttggtacttgcatgtcatggttcgatggctacttctgaacagaaacttatc
tttgaaaagccaccaccaaatgtacggaagatagttctggctacaaacatggcagaagca
agtattacaataaatgatatcgtctttgttgtagactgtggaaaagcaaaggagactaca
tatgatgctttgaacaatacaccttgcttgctgccatcttggatttctaaagcttctgct
cgtcaaagaagaggtagggctgggcgtgtgcaaccaggggaatgctatcatctctatcct
agatgtgtatatgatgcctttgcagaatatcaacttcctgagctgctacgaaccccgctg
aattcattatgtttgcaaataaaaagcttgcatgttggtagcataggggagttcttatca
tctgctttgcagccccccgaatctcttgctgtacaaaatgctatcgaattccttaagaag
attggaggtctagatgagcaggagaatcttacaaatcttggtcaatatctttcaatgctt
ccagttgatccaaagctaggaaagatgcttattatgggtgccatttttcggtgtgtggac
ccagttcttacagttgtagctggtctaagtgttagagacccttttttattaccacaggac
aagaaggacttggcaggaactgcaaaattacgattctcagcaaaggattacagtgatcat
atggctctcatccgtgcatacgagggatggaaagaagcagagagagaaggatcagcatat
gagttctgttggaggaactttctttcagcgcaaactctacaagcaattcattctcttagg
aagcaatttagctttattttaaaagatgctggtttagtagatgcagactccagcgtcaat
aacagcttgagttataaccagtcactggttcgagctattatatgctctgggctgtttcct
gggatagcgtcagttgtgcacagagagaagtccatgtctttcaaaacgatggatgatggc
caggttttactttatgctaactctgtgaatgcaaattaccagacaatcccatatccctgg
ttggtctttggtgagaaggtgaaagtcaacactgtatttattcgcgattcaacaggtgta
tctgactcaatactgatcctatttggtggctctcttgtgagaggagaagtgcctgggcac
ttaaagatgctggatggctacattgatttttttatggatccaagtttagctaactactac
tgtagtctcaagatggaacttgataagcttgtccttagaaagcttgaagatccaaaagtg
gatatccacaaagaaagcaagtacctaatgcttgctgttcaggagcttgtttcgggagat
ctgtgtgaaggaagatttgtatttggaagagaaacaagaagggccaggtttagtagcaag
gagagtgacaagcatgatttcgtgaagaacaacaccaacccaaagagcttgctgcagacg
ttactgatgagggctggccacgctcccccgaggtacaagacgaagcacctgaagaccaac
gaatttcgggcaatagtggaatttaaggggatgcaatttgttggaaagccaaagaagagc
aagcagtttgcagaaagggatgctgccatagaagctatggcatggctgacccacacttct
gataagagacaccaggatgaaggagatgaagactcccagatcgatctcacagacaatatg
cttaagcttataagcaaatcaaggcgaaagttgaggcgccgttaa
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