Zingiber officinale (ginger): 122029997
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Entry
122029997 CDS
T08725
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122029997
04120 Ubiquitin mediated proteolysis
122029997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122029997
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122029997
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122029997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
FlxA
DUF2756
zf-ANAPC11
zf-RING_16
zf-RING_5
zf-RING_11
zf-HC5HC2H
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
122029997
NCBI-ProteinID:
XP_042445084
LinkDB
All DBs
Position
10B:93601819..93607775
Genome browser
AA seq
510 aa
AA seq
DB search
MMRLQNYAGFSFLATMSAICYAFSSRGQFYPATVYLSTSKICFVLLLNMGLVIMCIMWQL
VKRLFLGSLREAEAERLNEQSWREAMDILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRIEYIETTPSVSMLSHVRIVSFMFFLLIVDCLFLHSSLRSLIQTRQASVALFFTFEYT
ILATTTVSTFVKYVFYVSDTFMEGQWERKAVYTFYLELVRDLLHLSLYIVFFLAIFVSYG
IPLHLIRELYETFRSFTKRVTDYVRYRKITSNMNERFPDATQEELNVTDAICIICREEMI
TAKKLLCGHLFHIRCLRSWLERQHTCPTCRALVAPPENGPASRQHGIPYVPNQPIVGSAA
TSSSQSLSGATEDAKLSRHQALLQAAAMAASLYETSFIYRPPSSFWPPGHGSNRNDNPHS
EAFNRTTVSLTGEVAASGQSTDGEVSDNQVLQASLLKAQQDVIRSQIQLLQTQLQALQQQ
VHQSKPGDADPKGKSTITFDPTTSTSSTSS
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggcttcaaaattatgctggatttagttttttagcaactatgagtgctatctgc
tatgcatttagtagcagagggcagttctatcctgccacggtgtacctctccacttccaag
atttgttttgtccttctgctgaacatgggtctagtcatcatgtgtataatgtggcagtta
gtgaagcgtttattcctgggttcactcagagaagcagaagctgaaagacttaacgaacaa
tcatggagggaggccatggatattctttttgcaattaccatattccgtcaagacttctca
gttacttttctagctatggtcacggctcttttgttgatcaaggcattgcattggttggcc
cagaagagaattgaatatatagagacaactccatccgtttctatgctgtcccatgtacgg
atagtttcatttatgtttttcctcctcattgttgactgtcttttcttgcacagttctttg
aggtctctgatacaaactcggcaagcatcagttgcactcttctttacatttgaatataca
atcttagcaacaacaacggtgtcaacatttgtgaagtatgtattctatgtaagtgacacg
tttatggaagggcagtgggagaggaaggctgtttatacattttaccttgagcttgttcgg
gaccttcttcacctgtctttgtatatagtattttttctagccatctttgtgagctatggt
atcccgttgcatctgatacgcgagctatatgagacatttcgcagttttacaaagcgtgtg
acagattatgttcgataccgcaaaattacctcaaatatgaatgagcgtttccccgacgca
acacaagaagaacttaatgtgactgatgcaatatgcattatatgtcgagaagagatgatc
acagcaaagaaattgttatgcgggcacctttttcatatccgttgtctaaggtcatggtta
gagagacaacatacttgccctacctgcagagctttggttgcaccacctgaaaatgggcct
gcatctaggcagcacggaattccatatgttccaaatcaacctatagttggatcagcggca
acttcatcttcacagagtctcagtggcgcgacagaagatgctaaattaagccggcatcag
gccctgcttcaagcagcggcaatggctgcatccttatatgaaacttcattcatctaccgt
ccaccaagttccttctggcctccaggtcatggatcaaatcggaatgataatccacattca
gaggcattcaaccggacgacagtgtcactaactggagaagtagctgcttctggacaatcc
accgatggcgaggtatccgacaatcaagttcttcaagcatcattattgaaggcgcaacaa
gatgtcatccgaagccagattcagcttctacaaactcaactgcaagctctacaacagcag
gtacatcaatccaaacctggtgatgctgatccaaagggaaagtctactatcacattcgat
cctaccacatctacatcatcaacaagttcgtag
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