Zingiber officinale (ginger): 122030482
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Entry
122030482 CDS
T08725
Name
(RefSeq) regulation of nuclear pre-mRNA domain-containing protein 1B-like isoform X1
KO
K15559
regulator of Ty1 transposition protein 103
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122030482
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122030482
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CID
POL2_thumb
CTK3
ALIX_LYPXL_bnd
Pol_alpha_B_N
Motif
Other DBs
NCBI-GeneID:
122030482
NCBI-ProteinID:
XP_042445637
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Position
1A:complement(124125527..124147154)
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AA seq
525 aa
AA seq
DB search
MTDAFNNQILVEKLSKLNNSQQSIQTLSNWCVINRKKAKNIVETWDIAFNNSPREKRVPF
LYLANDILQNSRRQGSEFVNEFWKVLPGCLKNVYENGEDHGKKAVNRLVEIWDERKVFGS
RGRGLKDEILGTVPAPVSNNGKSNSNPIKLIRKDADSVRVKLALGEMPEKIVTAYQSVFD
EYSNEDTALSKCNDAAQVLERVEKNIDIVTKQGDQQGPTFITDLQNQEAVLKQCIEQLET
AKSTRATLVYQLTEALKEQEFKLDLINDKLQIAHSLSEHAGSMRRQRLLLAAGESGFDPT
SSLPMSNPQLPPPHSVTSFAGSVSSAEDDHKKAAAAVAAKLAASSSSAQVLSSILSSLAA
EEAASMGNSLNSQVLSDGQAAFPLEKKPRLEKLISTPDMGIHSYFSQAQPQQHQSIPFAS
QSIQAPPTFTPPLPPLPPLPPPSLQQCAQTNGVTNMGPFPFPGSSVLPPPLSHASLGFTR
PIIPPVPPPPPPPQQHQQSTSMGFYQSPGVGFYGQPQTAPTAQPQ
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgactgatgctttcaacaaccagatattagttgagaagctctcgaagctcaataattca
caacaaagtattcaaaccttgtcaaattggtgtgtcattaaccggaagaaagcaaaaaat
atagttgagacatgggacatagctttcaacaattctccaagagaaaaaagagtgcctttt
ctatacttggccaatgacatcttacagaatagtagacgccaaggaagtgaatttgtgaat
gaattttggaaagtacttcctggatgtttaaagaatgtctatgagaatggtgaagatcac
ggaaagaaagcggtgaatcgattagtagagatttgggatgaaagaaaagtatttggctct
cgtgggcgaggcctaaaggatgagatccttggtactgtccctgcccctgtttcaaacaat
ggcaagagcaattcaaatcccatcaaattaattcggaaagatgctgattcagtacgagta
aaactagctcttggtgaaatgcctgaaaagatagtgactgcatatcagtctgtgtttgat
gaatattccaacgaagatactgctttgagtaaatgcaatgatgctgctcaagttctggag
agggtggaaaagaacattgatattgtaactaaacaaggtgaccaacaagggccgacattt
ataactgatcttcagaatcaggaagctgtacttaaacaatgtatcgaacaactagaaact
gcaaaatcaactagagctacactggtttatcagctgacagaagctctaaaagagcaggaa
tttaagctggatctcattaatgataagttacagattgcccattccctcagtgaacatgcc
ggtagcatgcggcggcaacgactactcttggctgcgggggaaagcggttttgaccctacc
tctagcttaccaatgtccaatcctcaacttccaccaccacactctgtaacttcattcgct
ggcagcgtaagcagtgcagaagatgatcacaagaaagctgcagctgcagttgctgcaaag
ctggctgcatcatcatcatcggcgcaggttctatcttctatcctgtcgtctttggctgca
gaggaagctgcttcaatgggcaacagcctgaattcccaagtcctctctgatggccaagct
gctttccctttggagaagaaaccccggctcgagaagctgatttccacacccgatatgggc
atacattcctactttagccaggcgcagccgcaacagcatcagtcaattccatttgcatcc
cagagcattcaggcacctccaacttttacaccgccactgccgcctctccctccactgcca
ccaccatcactgcagcaatgtgcacaaacaaacggggtaacaaacatgggaccttttcca
tttccaggcagttcagtgctgcctccaccgctatcccacgcatcactggggttcacaaga
cctattatcccacctgtacctccgccgccaccaccaccacagcagcaccagcaatcaacc
tcgatgggcttctaccaatctccaggggttgggttctatggtcagccacagacagctcca
actgcccaaccgcagtga
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