Zingiber officinale (ginger): 122030932
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Entry
122030932 CDS
T08725
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122030932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122030932
03012 Translation factors [BR:
zof03012
]
122030932
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122030932
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122030932
Translation factors [BR:
zof03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122030932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
dsrm
AAA_19
T2SSE
nSTAND3
ATPase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
122030932
NCBI-ProteinID:
XP_042445903
LinkDB
All DBs
Position
11A:95278642..95290469
Genome browser
AA seq
1156 aa
AA seq
DB search
MYRGIGYGVGLLLRRRRCGATLLNLKFGALSFLLRHSICASAGDVTSKCCIRWERGFCSY
AVEQFSDDEYECEFDNQQRSSSMANIDEWRWKLGLLLRNPEEQEIVSRDKRDRRDYEQIS
NLAKILGLYSELYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQDHVDK
ILLTSNKVSGELENNSSSKVVEDDEPYERQESLVDGSVMEKILQRKSNRMRNMQITWQES
PEGVKMLNFRKSLPSFKEKDRLLAAIAHNQVMVISGETGCGKTTQLPQYVLESEIESGRG
AFCNIICTQPRRISAMAVAERVSTERGENLGETVGYKVRLEGIKGKNTHLLFCTSGILLR
RLLGDRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLRRRRDLRLILMSATLNAELFSSY
FGGAPTIHIPGFTYPVRAHFLEDILEKTGYKLTSFNQIDDYGQEKLWKMQRQLMPRKRKN
QITSLVEDALKNSNFEDYSSRARDSLASWTPDCIGFNLIEAVLCYICRKEQPGAVLVFMT
GWDDISCLRDQLRAHPLLGDPNRVLVIACHGSMATSEQKLIFEKPPPNVRKVVLATNMAE
ASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASAHQRRGRAGRVQPGECYHLY
PRCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSASLQPPESLSVQNAVEFLK
KIGALDEQENLTNLGRYLSMLPVDPNLGKMLIMGAIFRCVDPVLTVVSGLSVRDPFLLPQ
DKKDLAGTAKSRFSGKDYSDHMALVRAYEGWKDAEREGSTYEYCWRNFLSTQTLQAIHSL
RKQFSFILKDAGLVDTDSSISNSLSHNQSLVRAIICSGLFPGIASVVHREKSMSFKTMDD
GQVLLYANSVNAKYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGSLVRGEMSG
HLKMLDGYIDFFMDPNLINCYWNLKTELDKLVLRKLEDPKIDIHKEGKFLMLAVQELVSG
DLCEGRFVFGRETRRVRSSSNESNKHDLLTNVTNPKGLLQTLLMRAGHTPPRYKMKHLKT
NEFRAIVEFKGMQFIGKPKKCKQFAERDAAIEGLTWLTHTEKRHQHVGDEDSEIDLTDNM
LKLLSKPRRKKSKHQR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgcggaatagggtatggtgtcggtttgcttctgaggcgtcggcggtgtggagca
acactactgaatctcaagttcggagctttatctttcctcttacggcactcgatctgtgcg
agtgctggggatgttacttctaaatgctgtattcggtgggagaggggtttctgcagctat
gcagtggagcagttctctgacgacgaatatgagtgcgaattcgataaccaacagcgttct
tcttcaatggctaacattgatgaatggagatggaaacttggtttgcttttacgtaaccca
gaagagcaagagattgtttccagagacaaaagagatcggcgagattatgaacaaatatcc
aatcttgcaaaaatattgggtctttacagtgaactatatggaaaggtagtggttgccagc
aaggtccctctacctaattatagacctgatcttgatgataagcgaccacaaagagaagtg
gtcattcctcttagcttgcagaggagggttgagggcctcctgcaagaccatgttgataag
atattgttaacatctaacaaggtcagcggtgaattggaaaacaactcttccagcaaagtg
gtggaggatgatgaaccatatgaaagacaagaatctttggttgacgggtcggttatggaa
aagattctacagagaaagagtaaccgaatgagaaacatgcagataacttggcaggaatca
ccggaaggtgtaaagatgctgaattttagaaaatcccttccatcattcaaggagaaggac
agattactggctgctatcgcccacaaccaggtgatggtgatttctggggaaactggttgt
ggtaaaacaactcaacttcctcaatatgtactagagtctgagatagaatctggccgtgga
gcattttgtaatatcatctgcactcagccacgaaggatatctgctatggctgttgcagaa
agagtttcaactgaaagaggggagaatcttggtgagacagttggttacaaagttcgatta
gaggggatcaaaggaaaaaatacacatctacttttttgtaccagtggtattttgctaaga
agattgctgggggaccgaaatttgaatggtgtaactcatgtttttgttgatgaaattcat
gaacgaggcatgaatgaagattttttgttgatcgtgttaaaggaccttcttcgacgtcgt
cgtgatttgaggttgattttgatgagcgcaactctaaatgctgaattattttcaagttac
tttggtggggcaccaacaatccacattcctggcttcacctatcctgtaagggcacacttt
cttgaagatattcttgagaagactggatacaagctgacttctttcaaccaaattgatgac
tatggccaagaaaaattgtggaagatgcagaggcagctaatgccgcggaaaaggaaaaat
cagattacttctcttgttgaggatgctcttaaaaattcaaattttgaggactacagttct
agagcacgtgattctttggcctcctggacaccagattgtataggttttaaccttattgag
gctgttctatgttatatatgccggaaggagcagccaggtgccgtgcttgtgtttatgact
ggctgggacgacattagttgcttgagggatcagctaagggctcatcctcttttaggagat
ccaaacagagtgttggtaattgcatgtcatggttcaatggccacttctgagcagaaactc
atttttgaaaagcctccaccaaatgtgcgaaaggtagtcctggctacaaacatggcagaa
gcaagtattaccataaatgatatcgtctttgttgtagactgtggcaaagcaaaggagact
acatatgatgctttgaacaatacaccttgcttgctgccatcctggatttctaaagcttct
gcccatcaaagaagaggtcgggctggacgcgtgcaaccaggggagtgctatcatctctat
cctagatgtgtatatgatgcctttgcagaatatcaacttcctgagctgctgcgaactcca
ttgaattcattatgtttgcaaataaaaagtttgcaagttggtagcataggagagttcttg
tcagcttctttgcagcccccagaatctctctctgtccaaaatgctgttgaattcctgaag
aagattggagctctagatgagcaagagaatcttacaaatcttggtcgatatctatcaatg
cttccagttgatccgaatctaggaaagatgcttattatgggtgccatttttcggtgtgtt
gacccagttcttacagtagtatctggtctgagtgttagagaccctttcttattaccacag
gacaagaaggatttggctggaactgcaaaatcacgattctcaggaaaggattacagtgat
catatggctcttgttcgtgcatacgagggatggaaagatgcagagagagaaggatcaaca
tatgaatactgctggaggaactttctttcaacacagactcttcaagcaattcattctctg
aggaagcaatttagctttattctaaaagatgctggtctagtagatacagactccagcatc
agtaacagcttgagccataaccagtcactggttcgagctattatatgctccgggctgttc
ccagggatagcttcagtagtgcacagagagaagtctatgtctttcaaaaccatggatgat
ggccaggtgttactttatgctaactctgtgaatgcaaagtatcagacaatcccatatccc
tggttggtctttggcgagaaggtgaaagtcaacactgtttttattcgtgattcaacaggc
gtgtccgactcaatattgatcttatttggtggatctcttgtgagaggagaaatgtcaggg
cacttaaagatgttggatggctacatcgatttttttatggatccaaatttaatcaattgc
tactggaacctcaagacggaactcgataagcttgttctgagaaagcttgaagatccaaaa
attgacatccacaaagaaggcaagttcctaatgcttgccgttcaggagcttgtttcggga
gacctgtgcgaaggaagatttgtgttcggaagagaaacaagaagggtcaggtctagcagc
aatgagagtaacaaacatgatctcttgacgaacgtcacaaacccaaaggggttgctacag
acattactgatgagggccggtcacactccgccgaggtacaagatgaagcatttgaagacg
aacgagttccgcgcgatagtggaattcaaggggatgcaatttatcggaaagccaaagaaa
tgcaagcagtttgccgagagggatgctgctatagaaggtctgacatggctgacacacact
gagaagagacaccagcacgtaggtgatgaagactccgagatcgatctcacagacaatatg
ctgaagcttttaagcaaacccaggcgaaagaagtctaagcatcaacgctaa
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integrated database retrieval system
