Zingiber officinale (ginger): 122031134
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Entry
122031134 CDS
T08725
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
zof04812
]
122031134
Cytoskeleton proteins [BR:
zof04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
122031134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_SCAP
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
NBCH_WD40
eIF2A
Beta-prop_EIPR1
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_Vps41
Beta-prop_IP5PC_F
Beta-prop_DCAF12
PROPPIN
VPS8_N
Beta-prop_RIG_1st
Glyco_hydro_52
Motif
Other DBs
NCBI-GeneID:
122031134
NCBI-ProteinID:
XP_042446151
LinkDB
All DBs
Position
11A:12303303..12313850
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AA seq
777 aa
AA seq
DB search
MAATKRAYKLQEFVAHSSNVNCLKIGRKTSRVLVTGGEDHKVNVWAIGKPNAILSLSGHM
SAVESVSFDSSEVLVAAGATSGSIKLWDLEEAKIIRTLTGHRSNCIAVDFHPFGEFFASG
SLDTNLKIWDMRRKGCIHTYKGHTRGINAIKFSPDGRWVVSGGEDNIIKLWDLTAGKLLH
EFKLHEGQIQCIDFHPHEFLLATGSADKTVKFWDLETFELIGSSGPEASGVRSMTFNPDG
RTFLCGLHESLKVFSWEPIVCHDNVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLS
CIEPYAIASPRLNGHSGQKSTSDDNPSMPADNIKSSMRRLSILQSSEANSETKSLPATVS
APGTPQRIGACASTRVPLTAPASVSSSVKRSLSKLQSTSNLQTNKADIVPVIVPRDSLRL
QLPSDCTKDSRVGKTTPFDIQSKFTEFWKVSNIKENTDKTDISIQSGYLSSSNIEQNEFL
GQTPVSSGNAGTQRVSADENHLDGIKNLIKGRIRSNSFREPRLHFEQENFKIRVNKPKEV
FSSDVSRRGRARSLVNCEGMEPSPSYDRPTLSSSSEITVVARSSYSLRNHRQNTEIETLP
TLSASDEDSIEIILKSHDQFLNSTQSRLTKLQVVQRLWERNDVKGVIRALERMSDHSVSA
DVLCSLKDKSDIITLDIFTSLLPLLTSLLESKMDRHLVVALEMLLELVRIFGPVIHSTVS
AGPSVGVDLQAEQRLERCNLCIVELEKVKHSISSLMRRGGSIAKNARELNLALQGVL
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggcggccactaaacgggcttacaagctacaggagtttgtcgctcattcttccaatgtg
aattgcctaaagattgggaggaagacgtcaagggtccttgtgacgggaggggaggaccac
aaggtcaatgtttgggctattggaaagcccaatgccattttgagcctaagtggccatatg
agcgcagttgaatcggtaagttttgattcatcagaggtattggttgctgctggtgcaact
agtgggtcaataaaattgtgggatttagaagaggcaaagattattcgcactctaactggt
cataggtcaaactgtatagcggttgattttcatccatttggtgaattctttgcatctggg
tcactagatacaaatcttaaaatatgggatatgagaagaaagggatgcatccatacctac
aagggccatacaagagggattaatgctattaaattcagccctgatggccgatgggttgtt
tctggtggggaagacaatattataaagctatgggatcttactgctggaaagcttttacat
gaattcaagctccatgagggtcaaattcagtgtattgattttcatcctcatgagtttctg
ctggcaacaggttcagctgataagactgttaaattctgggatctcgagacttttgaatta
ataggatcttctgggcctgaggcttctggtgtacgttctatgacatttaatcctgatggg
agaacattcctctgtggtttgcatgaaagtctgaaggtgttttcttgggaaccaatagta
tgccatgataatgtagatgtgggatggtctagactatcagatatgaatgttcacgaggga
aaacttcttggatgttcatacaatcaaagttgtgttggcgtatgggttgtggacctgtct
tgcattgaaccatatgcaattgctagtcctagattaaatggtcattcaggccaaaagtct
acatcagatgataatccatctatgccagctgataacataaagtcaagtatgaggagatta
tcaatattacaaagttctgaagcaaattctgagacaaaatcattaccagcaacagtcagt
gctccaggtacccctcaaagaattggggcatgtgctagcacgagagtacctctgacagca
ccagcatctgtttcttcctctgtaaaaagaagtttatcaaaacttcagtccacatccaac
cttcagaccaacaaagcagatatagtaccggtgattgttccaagagatagcctgaggcta
cagttgccttctgattgtactaaagactctagggttggcaaaacaacgccatttgatatc
caatcaaaatttactgaattttggaaggtgtcaaacatcaaagagaatacagataaaaca
gatatatccattcagtctggatatttgagcagtagtaatattgaacaaaatgaatttctg
ggccaaactcctgtttcttctggcaatgctggaactcaacgtgtgtcagctgatgaaaat
catctggatggcattaagaatttgattaaaggaaggattagatctaattcattcagagag
ccacgtttgcactttgaacaggaaaattttaagattagagtcaataagccaaaggaagta
ttctcatctgatgtttcacgacgaggaagagcaaggtcacttgtaaactgtgaggggatg
gaaccttccccaagctatgatcggccaacattaagcagttcttccgagataacagttgtt
gctcgctcctcctactctttgagaaatcacaggcagaatactgaaattgaaactctacct
actttatctgcttctgatgaggattctatagaaattatattgaagagtcatgaccaattc
ttgaactcgacacaatctcgattgaccaaattacaggtagtgcagcggctttgggaaaga
aatgatgtcaaaggtgtcatcagagcccttgaaagaatgtctgatcacagtgtttctgct
gatgtattatgctctctgaaagataaaagcgatatcattactctggatatcttcacctct
ctcctaccacttttgactagtcttcttgaaagcaagatggataggcatttagttgtcgcc
ctggaaatgttgctggagcttgtaaggatatttggtcctgtaatccattcgaccgtatcg
gcaggtccatctgttggtgttgatcttcaagcagaacagaggctggaaaggtgcaattta
tgcatcgttgagctggaaaaggtcaagcatagtatttcttccctgatgagaagaggaggg
tctatcgcgaagaatgcacgcgagctgaatcttgctctacagggagtgctgtga
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