Zingiber officinale (ginger): 122031716
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Entry
122031716 CDS
T08725
Name
(RefSeq) SWI/SNF complex subunit SWI3D-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122031716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122031716
03036 Chromosome and associated proteins [BR:
zof03036
]
122031716
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122031716
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122031716
PBAF complex
122031716
GBAF(ncBAF) complex
122031716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
122031716
NCBI-ProteinID:
XP_042446750
LinkDB
All DBs
Position
11A:88765898..88773053
Genome browser
AA seq
941 aa
AA seq
DB search
METKGGNDRAAPASAEASAPNSTAAPAPARPPPPETLTEAPRRRTGGNKRKASGSASSSS
APTKRPAKERSLLHHVLPVHNGPCTRARQSPLKHSTAAGNRPQQLASKSSLASDAGGKGA
LSAAGSIKAEEEVVHEQLVDKEFEAVRSRGAKVHAVPTPAGWFSWKMVHPVEKHTLPSFF
DGKSENRTPEVYMEIRNSIMKKFHSDPETQIELKDFSELSVGDIDARQEVFKFLDHWGLI
NFHPFPPAKSEAIIADAYDEDKTSSLVDKLYQFETIQSLPQIASKYESLLPKPQSLLPES
SLGDDLVRRVGVDYHCNSCSADCSRKRYHCQTQADFDLCTDCFNDGKFGSGMARADFILM
ESAEFPGLNGGSWTDQETLLLLEALELFGENWNEIAEHVATKTKSQCILHFLQMPIEDSF
IENDDVADDNYLDSNDHITENKEPTAKSTSEVVEADKKETNESSREDTVGVETSKLDAFE
TADEPMTSKPDSLVDGNTCNAKNFHEGETNFAIDALKAAFQAVGYFPEQGLGSFAEAGNP
VMALAAFLSSIVEPDAVLTSCRSSLGAMSEDMPGVQLATRHCFILEDPPKDCKDPLTTVS
SVAEAINKESNTDERKMQSLDATNKSKDEDVASVSIENEKSLLLQDSSTTQTDEKAAQEA
SPSKKAPSPVQNSVDQSLSTEKSLSANVNDVADTALTVTSMPSASKETEDLASKEQIAKG
QESSDSMLVDEKLNSVDNSNDLASTDMIPQQTDSSKGAENPDTSIVLEGHEQMQTGVSTN
GTKEKADDCERNEASNVEKNFNPTEIEDGHNLDRLKRAALTALSAASVKAKLLAKLEEDE
VRRLISLIIDKQLHKLETKLSLFSDIESVVLRMREQTEKARHRLMFERSQIIAARLGVPP
SSLRANQASLPANRLAMGYGTSGPRPFNMATQKQPPPLSRQ
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggagacgaaaggcggcaacgaccgtgcagccccggccagcgcagaggcatctgcaccc
aactcaacagctgcgccggcgcctgctcggccaccccctccggaaaccctaaccgaagct
ccacggaggaggactggcggaaacaagagaaaagcctcgggttcagcctcctcctcctcc
gcacccacgaagcgcccggccaaggagaggagtctcctccatcacgtcttgcccgtgcat
aacggcccttgtactagagcccggcaatcacccctcaagcactcgaccgccgccggaaat
aggcctcaacagcttgcctcgaagtcctcgttggcgtcggatgctgggggtaagggcgct
ttatctgctgctggttcgattaaagcggaggaggaggtagttcatgagcaactcgtggat
aaggagttcgaagccgttcgatcaagaggtgccaaggttcatgctgttcctactcctgct
ggatggttctcatggaagatggttcatcctgtggagaagcataccctgccttcttttttc
gatgggaagtctgagaacagaacgcctgaagtttacatggagattaggaattctatcatg
aagaaatttcattctgatccagaaacacagattgaactcaaagatttttctgagctctct
gtcggagatattgatgcgaggcaagaggtcttcaagttcttggaccactggggtctgata
aatttccatcctttcccaccagctaaatctgaagctatcatagctgatgcctatgatgaa
gataaaacatcgtctttggttgataagttgtatcaatttgaaacaattcagtcattgccc
cagattgcttctaaatatgaatccttgctacctaagccacaatctttgcttccagaatct
agcctaggtgatgatttggttaggcgagttggtgttgattaccattgcaactcttgctca
gctgattgctctagaaagcgttaccattgtcaaacgcaggcagattttgatttgtgcact
gattgctttaatgatggtaagtttggatctggcatggcacgagctgattttattctgatg
gaatcagcagagtttcctgggttgaatggtggaagttggacagatcaagaaacattactt
ctattagaagccttagagcttttcggggagaactggaatgagattgcggaacatgttgct
accaaaaccaaatcccaatgcatcttacattttcttcaaatgcccattgaagattccttc
atagaaaatgatgatgttgctgatgataattacctagatagcaacgatcacattacagaa
aataaagaaccaacagccaaaagtacttctgaggtggtggaagcagacaagaaagaaaca
aatgaatcctctcgtgaagatactgttggagttgaaaccagtaaactagatgcttttgag
acagcagatgaacctatgacttccaaaccagattctctggtggatggaaatacttgtaat
gctaaaaatttccatgaaggtgagaccaactttgccattgatgcactgaaggctgcattt
caggctgtaggatattttcctgaacaaggattgggttcatttgcagaagctggaaaccca
gtgatggcacttgcagcattcttatctagcattgttgaacctgatgctgttctaacctct
tgccgcagttctcttggagccatgtcagaagacatgcctggtgttcagcttgctactagg
cattgttttatccttgaagatccaccaaaagactgcaaggacccacttaccactgtgagt
tctgttgccgaagccatcaacaaggagtctaacacggatgaaaggaaaatgcaaagttta
gatgccactaacaaatccaaagatgaggatgtagcttcagtttccatagagaatgagaaa
tcccttttgttgcaagattcctcaacaacacaaactgatgaaaaagcagcacaggaggct
tctccttcaaagaaagcaccaagccctgtccagaactctgttgaccagtctttgtctaca
gagaaatctttatctgctaatgtgaatgatgtagcagatactgctttgactgtaacctca
atgccaagtgcttccaaagaaactgaagatttggcttctaaagaacaaattgcaaaaggt
caggagagtagtgattctatgttagtggatgagaaactaaatagtgttgacaattcaaat
gatttagcttcaaccgacatgatacctcagcaaacagattcatccaaaggcgcagaaaat
ccagatacttcaattgtattggaaggacatgagcagatgcaaacaggggtttcaactaat
ggaaccaaagaaaaagcagatgattgcgaaaggaatgaggcaagcaatgtggagaaaaat
ttcaacccaactgaaattgaagatggccacaacttagatagattaaaacgtgctgcactt
actgcactctcagctgcttctgttaaggctaagcttcttgccaagctggaagaagatgaa
gtgcggagacttatctcattaatcattgataagcagctgcacaagttggagacaaaattg
tcacttttctctgacattgaaagtgtggtgttacggatgagagaacaaacagagaaggca
agacacagactaatgtttgagcgttctcaaattattgcggctagacttggtgtgccccct
tcctctctcagagcaaaccaggcttccctaccagcgaatcgtttggccatgggatatggt
acctctggcccaagaccttttaacatggcaacccagaagcaaccaccacctctaagtcgg
caatga
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