Zingiber officinale (ginger): 122031721
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Entry
122031721 CDS
T08725
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122031721
04120 Ubiquitin mediated proteolysis
122031721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122031721
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122031721
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122031721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_16
MscS_porin
zf-HC5HC2H
zf-RING_5
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
122031721
NCBI-ProteinID:
XP_042446753
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Position
11A:complement(9616905..9624487)
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AA seq
524 aa
AA seq
DB search
MMRLQTYAGFSFLATMSAIYYAFSSRGQFYPAMVYLSTSKICFVLLLNMGLVIMCIMWQL
VKRLFLGSLREAEVERLNEQSWREVMDILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPSVSMLSHIRIISFMFFLLFIDCLFLHNSLRSLIQTRQASVALFFTFEYT
ILATTTVSTFVKYVFYVSDMLMEGQWERKVVYTFYLELVRDLLHLSLYIIFFLIIFVSYG
IPLHLIRELYETFRSFKMRIADYVRYRKITSNMNERFPDATQDELNATDAICIICREEMI
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVAPPENGQAGSSRQHGVPQVPSQPVGSV
TASSSQSPSGGTETAKLSRHQAVLQAAAMAASLYETSFTYCPPSSFLYASTNLKPPGYGS
NYNDNAHSEAFSGRTMPPTGEAAASEQSICSERSSLGNLNLQGSLLRAQQDVLRSQIQLL
QTQLQALQQQAHQSKPDNPDPKGKSIITFDLTVSKPDGAHQQDS
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctccagacatatgctggatttagtttcttagcaaccatgagtgctatctac
tatgcatttagcagcagagggcagttctatcctgccatggtgtacctttctacatccaag
atatgttttgttctcctcttgaacatgggtctagtcatcatgtgtataatgtggcagtta
gtgaagcgattatttctgggttcactcagagaagcagaagttgaaaggcttaatgaacaa
tcatggagggaggtcatggatattctttttgcgattaccatatttcggcaagacttctca
gttacttttctagctatggttacagctcttctgttgatcaaagcattgcattggttggcc
caaaagagagttgaatatatagagaccactccgtccgtttctatgctgtcacacatacgg
ataatttcatttatgtttttcctcctcttcattgactgtcttttcttgcacaattctttg
aggtctttgatacaaactcggcaagcatcagttgcactgttttttacatttgaatataca
atcttagcaactacaactgtgtcaacatttgtgaagtatgtattctatgtaagtgacatg
cttatggaaggacagtgggagaggaaggttgtttatacattttaccttgagcttgttcgg
gaccttcttcacctctctttgtacataatatttttcctaatcatctttgtgagttatggt
atcccactgcacctgatacgtgagctatatgagacattccgcagttttaaaatgcgtata
gcagattatgttcgataccgcaaaattacctcaaatatgaatgagcgtttccctgatgca
acacaagatgaacttaatgcgactgatgctatatgcattatatgtcgagaagagatgatt
acagctaagaaattgatatgcggacacctttttcatgttcattgcctaaggtcatggtta
gagagacagcatacttgccccacctgtagggctttggttgcacctcctgaaaatgggcaa
gcaggatcgtctaggcaacatggagttccacaagttccaagtcaacctgtcggatcagtg
accgcttcatcttcacagagtcccagtggtggtacagaaactgctaaattaagtcgccat
caggccgtgcttcaagcagctgcaatggctgcatccttatatgaaacttcattcacttac
tgcccaccaagttccttcttgtatgcatcaaccaacttaaagccaccgggctatggatca
aattacaatgacaatgcacattcagaggcattcagcggaaggacaatgccgccaactgga
gaagcagctgcttctgaacaatccatctgcagcgagagatcatccctcggcaatctaaat
cttcaggggtcattattgagggcgcaacaagatgttctccgaagtcagattcagcttcta
cagacacaattgcaagctctgcaacaacaagcccatcaatccaaacctgataatcccgat
cccaaaggaaaatctatcatcacattcgatcttactgtatccaaaccagatggtgctcac
caacaagatagttga
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