Zingiber officinale (ginger): 122031748
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Entry
122031748 CDS
T08725
Name
(RefSeq) nuclear cap-binding protein subunit 1-like
KO
K12882
nuclear cap-binding protein subunit 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122031748
09122 Translation
03013 Nucleocytoplasmic transport
122031748
03015 mRNA surveillance pathway
122031748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122031748
03041 Spliceosome [BR:
zof03041
]
122031748
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
122031748
Spliceosome [BR:
zof03041
]
Common components
Common spliceosomal components
Cap binding complex
122031748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
122031748
NCBI-ProteinID:
XP_042446807
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All DBs
Position
1A:complement(127220225..127247999)
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AA seq
633 aa
AA seq
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MSSWRALLLRVGDKCPEYGGSVDYKDHIETCHSMLSREFDHSKDEILELLLQCAEQLPHK
IPFYSVLVGLINLENEDFGKDVVDAIHSKLQDALLSENCDKIRISLRFLTALMCSKLVLP
SSVIEVFETLLSSALLTIDEEAGNLSWQPCADFYVTCILSSLPWGGTELIEQVPEEFDRV
IVQIQSYLLVRKRSYDNSFTAFENDGDKSVTEKDFLEDLWDRIQALSSNGWKVDSVPRPH
LSFEEQLVTGKSYSLPHISCPKQSATSQSTISREKDNYEVKLKYPQRLRRLHIFPSSKTE
HIQPIDRFIVEEYLLDVLLFFNGCRKECASYMASLPVSFRYEYLMAETIFSQLMFLPQPP
FRPIYYTLVIIDLCKALPGAFPAVVAGAVRALFDRIADLDMECRTRLILWFSHHLSNFQY
FWPWEEWAHVKDLPRWAPQRVFVQEVLEREVRLSYWDKIKQSIENASALEELLPPKSGPN
FKYNSEDDQGYALSRELRIMIRGRKTAREISPWVEENIIKVHGPKFALEVVIQTLLDIGS
KSFTHLITVLERYGQVITKLCATQDMQVLLIDEVSSYWKNSTQMTAIAIDRMMGYRLICN
LAIINWVFSLPNIEQFHVSDRPWEVTHSTFFKI
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttggcgggcgcttcttcttcgggtgggcgataagtgcccagagtacggaggc
tcagtcgactacaaagaccacatagaaacatgtcacagtatgctctcgcgagaatttgat
cactctaaagatgaaatacttgagcttcttcttcagtgtgctgaacagttgccacataaa
attccattttattcagtattggttggcctcataaatttagagaatgaagattttggaaag
gatgtcgtagatgccatccactctaaactacaagatgctttgttgtcagaaaattgtgac
aaaatccgcatatccttgaggtttttgacagcactgatgtgtagcaagcttgtcctccct
agttctgttattgaagtctttgagacacttctatcctctgctctgttaactatagatgag
gaggctggtaatctgtcttggcagccatgtgccgacttctatgtcacctgcattttgtcc
agtcttccatggggaggcacagaattgatagagcaagtgccagaggagtttgatcgagtc
attgttcagatacaatcttatttattggtcaggaagcgctcgtatgataatagtttcact
gcatttgagaatgatggagacaaatctgtcactgaaaaggattttctagaagatttatgg
gatcgtatacaagctctttcctctaatggatggaaggttgatagtgttccaaggcctcat
ctatcctttgaagagcaattggtcactggaaaatcttacagtcttcctcatatcagctgt
ccaaagcaatctgcaacttcacagtctacaatatccagagaaaaagataattatgaagtc
aagctgaagtatcctcaaaggctccgtcgacttcacatattcccttcaagcaaaactgag
catatacagcctattgaccggttcattgtggaagagtatttgttagatgtgctgcttttc
ttcaacggatgccggaaggaatgtgcttcatacatggccagcttgcctgtatcattccgc
tatgaatatctgatggcagaaactatattctctcagctaatgtttcttcctcagccgcca
tttaggcccatctattacacgttggtaatcattgatctgtgcaaggccttacctggtgca
tttcctgctgttgtggctggagctgttcgtgccctttttgatagaattgctgatctcgat
atggaatgtcgcactagactgattctatggttttctcatcatttgtcaaactttcagtac
ttttggccttgggaagaatgggctcatgttaaagatcttccaagatgggcgccacagaga
gtatttgtacaagaagtgttagaaagggaagttcgtttgtcatactgggataaaatcaag
cagagcattgagaatgcatctgcacttgaggaattgcttccaccaaagagtggacccaac
ttcaagtacaattctgaagacgatcaaggttatgctctttctagagagttgcgcatcatg
attaggggaaggaagacagctcgtgaaatcagtccatgggttgaggaaaatataattaaa
gttcatgggcccaagtttgcacttgaagttgttattcagacccttctggatattggttca
aaaagtttcacacatcttataactgtgttagaaagatatggccaagtcatcacaaagtta
tgtgctactcaggatatgcaagttttgttaatagatgaagtgagttcctattggaagaac
agtacgcagatgactgctattgccattgatcgcatgatgggttatcggcttatctgcaat
ttggctatcattaattgggtcttttctttacctaatattgagcaatttcatgtttcagat
cgtccatgggaggtaacccatagtacatttttcaaaatttaa
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