Zingiber officinale (ginger): 122031799
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Entry
122031799 CDS
T08725
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
zof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122031799
09124 Replication and repair
03420 Nucleotide excision repair
122031799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122031799
03400 DNA repair and recombination proteins [BR:
zof03400
]
122031799
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122031799
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122031799
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
I_LWEQ
Motif
Other DBs
NCBI-GeneID:
122031799
NCBI-ProteinID:
XP_042446883
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Position
11A:8485470..8500914
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AA seq
606 aa
AA seq
DB search
MAVITMLAKYKTTVKEPGIPGVLKMMEDVFSFTPNDPRSAKKLKVDFRNIKGHKFSKDGS
KQALLNLTQDPEKGGGYIFEFNNFADRNVCRDFVGKVLGKFQTLTTEQTDQPSSGKVTAS
EKATASIEQLSTKEMEHRMKLLREDSELQKLHKELVFGNVLTESEFWATRKALLDDDSDR
TLKQRTGFKSAMLADVRPSTDGQTNKVTFSLTPEIIHQIFSEKPAVHRAFLNFVPVKMTE
KDFWTKYCRAEYLHRTKNSVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTVDMV
ADFSDDYIHLSVHGILRDGNKETIDSENDFAKRTLAHDVNRHATVVLEGRALDIELGDTR
AVAEALARSKEASSVDTSDENANLDRQERVVRMTEIEDLQASHSLPYASLCIKDPREYFD
FQQVNALKALGGTGSRTIDYSINSEDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGL
TQQISSTRYNLGKNPQESVLDRFPKRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKV
LRLKSAMADIYQKLKAIKDVQSDFRHQISLLIQPMLQALDAAFAHYDAEEHKHSAKNGAK
PNGFVQ
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgatcactatgctcgccaagtataagacgactgtcaaggagcccgggattccc
ggggtgctcaagatgatggaagatgtattttcttttactccaaatgatccgaggtcagca
aagaagcttaaagtagattttagaaacattaaaggtcataaattcagtaaagatggttca
aagcaggcattgttgaaccttacgcaagatccagaaaagggtggaggctacatttttgag
ttcaataattttgcggatcgcaatgtttgtcgagattttgtagggaaagttttagggaag
tttcagactttgacaacggaacaaactgaccagccatcatctgggaaagttactgcatct
gagaaagctactgcatcaatcgaacaacttagcactaaagagatggagcacagaatgaag
ttgttgcgagaagatagtgaattgcaaaaattgcacaaagaacttgtctttggcaatgtg
ctgacagaatctgaattttgggccacgaggaaggctctacttgatgatgattctgataga
acattaaagcagcggacaggcttcaaaagtgcaatgcttgcagatgtaagaccatcaact
gatggccagaccaataaagttacattcagtctgacgccggagataattcatcagattttt
tctgaaaaacctgctgttcatcgggcatttttgaattttgttccagtcaagatgacagaa
aaggatttttggacaaaatattgtagagctgagtatctccacaggacaaaaaattctgtg
gctgcagcagcagaggcagctgaagatgaagaacttgctgtttttttgaagcatgatgac
atactggcaaatgaagcccggcgaaagatcagacgggttgatccaaccgtagacatggta
gctgattttagtgatgactacattcatctttctgttcatggaattcttcgagatggcaac
aaggagactattgacagcgagaatgattttgctaagaggactcttgcacatgatgttaac
cgtcatgcaacggttgttcttgaagggagggcattagatattgagttaggagacacacgg
gctgtagctgaagcacttgcaaggtctaaagaggcctcatctgttgacacatccgatgag
aatgctaatctagacaggcaggaaagggtagttcgaatgactgagattgaagatcttcag
gcttcccatagccttccatatgcatcactttgcatcaaggatccacgagagtattttgat
tttcaacaagtaaatgcactaaaggctttaggtggcactggttctagaacaatagattac
agcataaattctgaggatgcatattattatctactgcaacagatctctgaggtgaagttg
caaggtgtacataatccagttgttcaatctgacactgctcttaaggttcttactgggctt
acacagcagatttcgagtaccagatataatcttggaaagaatccacaggagagcgtcctt
gatagatttcctaaaaggaccaaggatgaaattatgcttcattggatgtcaattcaggag
ttacttcgacacttttggtcatcttatccaatcacaactgcctacctatataataaagtt
cttaggctaaagagtgctatggctgatatctatcagaagctcaaggccataaaggacgtg
cagtcagatttccggcatcaaatctctcttcttattcagcccatgcttcaggctctggat
gccgcgtttgctcattacgatgcagaagaacataagcattcagcaaaaaatggagccaaa
ccgaatggttttgttcagtaa
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