Zingiber officinale (ginger): 122032742
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Entry
122032742 CDS
T08725
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122032742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122032742
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
122032742
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
MACPF_D3
Motif
Other DBs
NCBI-GeneID:
122032742
NCBI-ProteinID:
XP_042447991
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Position
11A:95290897..95296172
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AA seq
546 aa
AA seq
DB search
MGEEPTSSSPLKEEADSRRAVVSGPLAYSGESLHFFNNFGDFKSSLKGIGESESFSRGIA
ALDTILGIKKPPRFPEDLDDASASLAVLEDEFLCRLAISMDEFKRSREEKEAEGAKDETV
SASGSSVNVTTKDKRMIAVPPRVPFHIPTIPRPQDVYKIRVNNNNLPFDHVWLDTGDGNM
IHPLLKLSVADFVDRKSESEPVEPLHLESTPFKLVETWNDFEMVVAKLRHVDELAVDLEH
NHYRSFQGLTCLMQISTRDEDFVIDTLKLRIYIGMYLREIFKDPSKRKVMHGADRDIIWL
QRDFGIYICNLFDTGQASRVLQMERNSLEYLLRHFCGVEANKDYQTADWRLRPIPHEMLK
YAREDTHYLLYIYDHMKRILLAESSDGNDLILEVYKRSSTICLQLYKKEIFTNTSFLNIY
GLRDADLNATQLAVVSALYQWRDYIAREQDESTGYILPNKTLIEIAKQMPPLPGALIPLV
MFKHPVVEQHLSTVIEIIKNSIGNAFSFEMIARQLKLERIEAQVEQIRQMRLRASSPSGN
IRMPYH
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaagaaccgacctccagctccccactgaaggaagaggcggacagtcgacgagcg
gtggtctccggacccctcgcttactccggtgagtccttgcatttctttaacaactttggt
gacttcaagtcctctctgaagggaatcggggaatctgagtccttctcgaggggtatcgct
gcattggatactattttggggatcaagaagcctccaaggttccctgaggatcttgacgat
gcctctgcctcgctagctgtcctcgaggacgagtttctttgtcgtcttgcgatctctatg
gacgagttcaagaggtcgagggaggaaaaggaagcagagggtgcgaaagatgagaccgtc
tctgcatcaggctcttctgtcaatgtgaccacgaaggataagaggatgatagcggttcct
ccgagggtaccatttcacattcccaccattccgcgtccacaggacgtatataaaatacga
gtgaataacaataacctgccgtttgatcatgtgtggttggacacgggcgatggaaatatg
attcatccactgctgaagttatctgttgcagactttgttgatagaaaatctgaaagtgaa
ccggtagaaccgcttcatctcgagtctaccccatttaagctggtggaaacttggaatgac
ttcgaaatggtagttgctaagcttcggcatgtagatgaattggcggtggatttagaacac
aatcattacagatcatttcaggggctaacctgtctgatgcaaatatctacaagagatgaa
gactttgtaattgacaccctcaagttacgaatatatattggaatgtacttgagggaaatt
ttcaaggacccttccaagagaaaggtaatgcatggggctgatcgtgacatcatatggttg
caacgggattttggcatatatatatgcaacctttttgatactggacaggcatcaagggta
ttgcaaatggaaagaaatagtttggagtatcttttgcgtcacttctgtggagttgaggca
aacaaggactaccagactgctgattggagattacgccctattccacatgaaatgctcaag
tatgctagagaagatacacattaccttctatatatatatgaccatatgaaaagaatattg
ttagctgaatcctcagatggaaatgatcttatattggaggtctacaagcgtagtagtaca
atctgcttgcaactttacaagaaagaaatttttactaatacatcatttcttaacatttat
gggttgcgagatgctgatttaaatgctacgcagcttgctgttgtttctgctctttatcag
tggagagactatattgcacgtgaacaggatgagagtactggctacatattacccaataaa
accctaattgagattgcaaagcagatgcctcctcttcctggagcattgattccgctggtg
atgtttaaacacccagtagttgaacagcatctgagtacagtcattgaaattataaagaat
tcaatcggtaatgctttttcttttgagatgatcgcaagacaactaaagctggagcgaatc
gaagcacaagtggagcaaattagacagatgcggcttcgagcttcctctccttcaggcaac
ataaggatgccataccattga
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