Zingiber officinale (ginger): 122033307
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Entry
122033307 CDS
T08725
Name
(RefSeq) RNA-binding protein Y14A-like
KO
K12876
RNA-binding protein 8A
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122033307
09122 Translation
03013 Nucleocytoplasmic transport
122033307
03015 mRNA surveillance pathway
122033307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122033307
03041 Spliceosome [BR:
zof03041
]
122033307
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122033307
Spliceosome [BR:
zof03041
]
Complex C
Other components
EJC/TREX
122033307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
122033307
NCBI-ProteinID:
XP_042448254
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All DBs
Position
11B:complement(73616620..73620528)
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AA seq
200 aa
AA seq
DB search
MAAVVGDVEVVDFEPDEDDLMDEDVGAAEADPSPVPKLRSTVAGSGSSGLGARKTKGRGF
REEAGPDRGGRLSARDFDSLDSDGGPGPQRSIEGWIVLVTGVHEEAQEDDLHNAFREFGQ
VKNLHLNLDRRTGFVKGYALVEFENFDEAQAAIMALNGTELLTQAIFVDWAFSKGPMKRR
NTRRRSPRAHRSRSPLRRRY
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtcgtaggggacgtggaagtggtagatttcgagcccgacgaggatgatctc
atggacgaggatgttggcgccgctgaggccgacccctctcctgtccccaagctccgatca
acggttgccggaagcggctcctctgggttaggagccaggaagaccaaaggccgcggcttc
cgagaggaagcaggtcccgatcgcggcggtcgactgtctgctagggatttcgattccctc
gactccgatggaggccccgggccgcagcggtctattgagggctggattgtgttggtaact
ggagttcatgaagaggcacaggaagatgatttgcacaatgcctttcgtgaatttggtcaa
gtgaaaaatttgcatttaaatcttgaccgccgtactggttttgttaagggttatgctctg
gttgaatttgagaactttgatgaagcacaagctgcaattatggcacttaatggaactgag
ctccttactcaagcaatttttgttgattgggcctttagcaaaggtcctatgaagcgtaga
aacacaaggagaagatccccacgagctcatcgttcaaggagtcctctgaggaggagatat
tga
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integrated database retrieval system
