Zingiber officinale (ginger): 122033544
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Entry
122033544 CDS
T08725
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122033544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122033544
03012 Translation factors [BR:
zof03012
]
122033544
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122033544
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122033544
Translation factors [BR:
zof03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122033544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_hel_CTD
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
dsrm
AAA_19
T2SSE
AAA_SelU
ATPase
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
122033544
NCBI-ProteinID:
XP_042448519
LinkDB
All DBs
Position
11B:87108204..87120147
Genome browser
AA seq
1156 aa
AA seq
DB search
MYRGIGYGVGLLLRRERCGATLLNLKFGALSFLLRHSICASAGDVTSKCCIRWERGFCSY
AVEQFSDDEYECEFDNQQRSSSMANIDEWRWKLGLLLRNPEEQEIVSRDKRDRRDYEQIS
NLAKILGLYSELYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQDHVDK
ILLTSNKVSGELENNSSSKVVEDDEPYERQESLVDGSVMEKILQRKSNRMRNMQITWQES
PEGVKMLNFRKSLPSFKEKDRLLAAIAHNQVMVISGETGCGKTTQLPQYVLESEIESGRG
AFCNIICTQPRRISAMAVAERVSTERGENLGETVGYKVRLEGIKGKNTHLLFCTSGILLR
RLLGDRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLRRRRDLRLILMSATLNAELFSSY
FGGAPTIHIPGFTYPVRAHFLEDILEKTGYKLTSFNQIDDYGQEKLWKMQRQLMPRKRKN
QITSLVEDALKNSNFEDYSSRARDSLASWTPDCIGFNLIEAVLCYICRKEQPGAVLVFMT
GWDDISCLRDQLRAHPLLGDPNRVLVIACHGSMATSEQKLIFEKPPPNVRKVVLATNMAE
ASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASAHQRRGRAGRVQPGECYHLY
PRCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSASLQPPESLSVQNAVEFLK
KIGALDEQENLTNLGRYLSMLPVDPKLGKMLIMGAIFRCVDPVLTVVSGLSVRDPFLLPQ
DKKDLAGTAKSRFSGKDYSDHMALVRAYEGWKDAEREGSTYEYCWRNFLSTQTLQAIHSL
RKQFSFILKDAGLVDTDSSISNSLSHNQSLVRAIICSGLFPGIASVVHREKSMSFKTMDD
GQVLLYANSVNAKYQTIPYPWLVFGEKMKVNTVFIRDSTGVSDSILILFGGSLVRGEVSG
HLKMLDGYIDFFMDPNLINCYWNLKTELDKLVLRKLEDPKIDIHKEGKFLMLAVQELVSG
DLCEGRFVFGRETRRVRSSSNESNKHDPLTNVTNPKGLLQTLLMRAGHTPPRYKTKHLKT
NEFRAIVEFKGMQFIGKPKKCKQFAERDAAIEGLTWLTHTDKRHQHVGDEDSEIDLTDNM
LKLLSKPRRKKSKHQR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgcggaatagggtatggtgtcggtttgcttctgaggcgtgagcggtgtggagca
acactactgaatctcaagttcggagctttatctttcctcttacggcactcgatctgtgcg
agtgctggggatgttacttctaaatgctgtattcggtgggagaggggtttctgcagctat
gcagtggagcagttctctgacgacgaatatgagtgcgaattcgataaccaacagcgttct
tcttcaatggctaacattgatgaatggagatggaaacttggtttgcttttacgtaaccca
gaagagcaagagattgtttccagagacaaaagagatcggcgagattatgaacaaatatcc
aatcttgcaaaaatattgggtctttacagtgaactatacggaaaggtagtggttgccagc
aaggtccctctacctaattatagacctgatcttgatgataaaagaccacaaagagaagtg
gtcattcctcttagcttgcagaggagggttgagggcctcctgcaagaccatgttgataag
atattgttaacatctaacaaggtcagcggtgaattggaaaacaactcttccagcaaagtg
gtggaggatgatgaaccatatgaaagacaagaatctttggttgacgggtcggttatggaa
aagattctacagagaaagagtaaccgaatgagaaacatgcagataacttggcaggaatca
ccggaaggtgtaaagatgctgaattttagaaaatcccttccatcattcaaggagaaggac
agattactggctgctatcgcccacaaccaggtgatggtgatttctggggaaactggttgt
ggtaaaacaactcaacttcctcaatatgtactagagtctgagatagaatctggccgtgga
gcattttgtaatatcatctgcactcagccacgaaggatatctgctatggctgttgcagaa
agagtttcaactgaaagaggggagaatcttggtgagacagttggttacaaagttcgatta
gaggggatcaaaggaaaaaatacacatctacttttttgtaccagtggtattttgctaaga
agattgctgggggaccgaaatttgaatggtgtaactcatgtttttgttgatgaaattcat
gaacgaggcatgaatgaagattttttgttgatcgtgttaaaggaccttcttcgacgtcgt
cgtgatttgaggttgattttgatgagcgcaactctaaatgctgaattattttcaagttac
tttggtggggcaccaacaatccacattcctggcttcacctatcctgtaagggcacacttt
cttgaagatattcttgagaagactggatacaagctgacttctttcaaccaaattgatgac
tatggccaagaaaaattgtggaagatgcagaggcagctaatgccgcggaaaaggaaaaat
cagattacttctcttgttgaggatgctcttaaaaattcaaattttgaggactacagttct
agagcacgtgattctttggcctcctggacaccagattgtataggttttaaccttattgag
gctgttctatgttatatatgccggaaggagcagccaggtgccgtgcttgtgtttatgact
ggctgggacgacattagttgcttgagggatcagctaagggctcatcctcttttaggagat
ccaaacagagtgttggtaattgcatgtcatggttcaatggccacttctgagcagaaactc
atttttgaaaagcctccaccaaatgtgcgaaaggtagtcctggctacaaacatggcagaa
gcaagtattaccataaatgatatcgtctttgttgtagactgtggcaaagcaaaggagact
acatatgatgctttgaacaatacaccttgcttgctgccatcctggatttctaaagcttct
gcccatcaaagaagaggtcgggctggacgcgtgcaaccaggggagtgctatcatctctat
cctagatgtgtatatgatgcctttgcagaatatcaacttcctgagctgctgcgaactcca
ttgaattcattatgtttgcaaataaaaagtttgcaagttggtagcataggagagttcttg
tcagcttctttgcagcccccagaatctctctctgtccaaaatgctgttgaattcctgaag
aagattggagctctagatgagcaagagaatcttacaaatcttggtcgatatctatcaatg
cttccagttgatccgaagctaggaaagatgcttattatgggtgccatttttcggtgtgtt
gacccagttcttacagtagtatctggtctaagtgttagagaccctttcttattaccacag
gacaagaaggatttggctggaactgcaaaatcacgattctcaggaaaggattacagtgat
catatggctcttgttcgtgcatacgagggatggaaagatgcagagagagaaggatcaaca
tatgaatactgctggaggaactttctttcaacacagactcttcaagcaattcattctctg
aggaagcaatttagctttattctaaaagatgctggtctagtagatacagactccagcatc
agtaacagcttgagccataaccagtcactggttcgagctattatatgctccgggctgttc
ccagggatagcttccgtagtgcacagagagaagtctatgtctttcaaaaccatggatgat
ggccaggtgttactttatgctaactctgtgaatgcaaagtatcagacaatcccatatccc
tggttggtctttggcgagaagatgaaagtcaacactgtttttattcgtgattcaacaggc
gtgtccgactcaatattgatcttatttggtggatctcttgtgagaggagaagtgtcaggg
cacttaaagatgttggatggctacatcgatttttttatggatccaaatttaatcaattgc
tactggaacctcaagacggaactcgataagcttgttctgagaaagcttgaagatccaaaa
attgacatccacaaagaaggcaagttcctaatgcttgccgttcaggagcttgtttcggga
gacctgtgcgaaggaagatttgtgttcggaagagaaacaagaagggtcaggtctagcagc
aatgagagtaacaaacatgatcccttgacgaacgtcacaaacccaaaggggttgctacag
acattactgatgagggccggccacactccgccgaggtacaagacgaagcacttgaagacg
aacgagttccgcgcgatagtggaattcaaggggatgcaatttatcggaaagccaaagaaa
tgcaagcagtttgccgagagggatgctgctatagaaggtctgacatggctgacacacact
gacaagagacaccagcatgtaggtgatgaagactccgagatcgatctcacagacaatatg
ctgaagcttttaagcaaacccaggcgaaagaagtccaagcatcaacgctaa
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