Zingiber officinale (ginger): 122033583
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Entry
122033583 CDS
T08725
Name
(RefSeq) WD repeat-containing protein RUP2-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
zof04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122033583
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
122033583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122033583
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122033583
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122033583
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122033583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
WDR90_beta-prop_4th
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Motif
Other DBs
NCBI-GeneID:
122033583
NCBI-ProteinID:
XP_042448576
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All DBs
Position
11B:complement(78323061..78324449)
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AA seq
365 aa
AA seq
DB search
MSDSHADSWEERAQSHWRFRLSSLVSPEAAAADASDAIGAVEFDPTGRLLATAGIARKIR
LYGLAALLPPADQSEPHAAVSERSAACRLCICAPAKLSSLRWRPGSDGRVIGSGDYDGVV
TEYDVERNAVVLERDEHGGRRVWSVDYSASGDLGASGSDDGTVQLWDPRCGGSGRAAAVM
RAGGPVCGVEFDPEGGPWVAAGSADRRAYVFDARAGAAGPVATLGGHERAVTYARFAQGW
RRLVTSGTDGTHRLWEWEQGRQVRAYRGHSNARSFVGMSVWRGAGLIGSGSESEEVFVYD
LRWEDPIWVQGFRRRRHESGSSGNGFVGAVSWMQLPSDGEPGALAAGASDGTLQVFVTMK
ISNSY
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgagcgactcgcatgccgactcctgggaagagagagctcagtcccactggcgcttccga
ctctcctctctcgtctccccggaggcagcggcggccgacgcctccgacgccatcggcgca
gtcgagttcgaccccaccggtcgactcttggccaccgcaggcatcgctagaaagataagg
ttgtacggtctcgctgctctgctgcctccggccgaccaatccgagccgcacgccgctgtg
tctgagcgctccgccgcctgccggctctgcatctgcgcgccggccaagctcagcagcctg
cggtggcgccccgggtccgacggccgcgtcatcgggtccggcgactacgacggagtggtc
accgagtacgacgtggagcggaacgcggtggtgctggagcgcgacgagcacggcggccgc
cgcgtctggagcgtggactactccgccagcggcgacctgggcgcctccggctccgacgac
ggcacggtgcagctgtgggacccgcggtgcggcggcagcgggcgcgcggctgccgtcatg
cgcgccggcgggccggtctgcggcgtggagttcgacccggagggcgggccgtgggtcgcg
gcgggcagcgccgaccggcgcgcgtacgtgttcgacgcgcgggcgggcgcggcggggccg
gtggcgactctcggcggccacgagcgggcggtgacgtacgcgcggttcgcgcagggctgg
cgccgcctggtcacctcgggcaccgacggcacgcaccgactgtgggaatgggagcagggg
aggcaggtgcgggcgtaccgcggtcactccaacgcccggagcttcgtcggcatgtcggtg
tggcgcggcgccggcctcatcggaagcggctcggagagcgaagaggttttcgtctacgac
ctccgctgggaagacccgatttgggtgcagggatttcggcggcggaggcacgaaagcgga
agctccgggaatgggttcgtaggggcggtgagctggatgcagctaccgtcggacggtgaa
cccggcgcgctcgccgccggagcgtcggatggaaccttgcaagtgtttgtcacgatgaag
atatcaaattcttactga
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