Zingiber officinale (ginger): 122033689
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Entry
122033689 CDS
T08725
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122033689
04120 Ubiquitin mediated proteolysis
122033689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122033689
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122033689
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122033689
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
FlxA
zf-ANAPC11
zf-RING_16
MscS_porin
zf-RING_Vps41
zf-HC5HC2H
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
122033689
NCBI-ProteinID:
XP_042448742
LinkDB
All DBs
Position
11B:complement(6273885..6281326)
Genome browser
AA seq
517 aa
AA seq
DB search
MMRLQTYAGFSFLATMSAIYYAFSSRGQFYPAMVYLSTSKICFVLLLNMGLVIMCIMWQL
VKRLFLGSLREAEVERLNEQSWREVMDILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPSVSMLSHIRIISFMFFLLFIDCLFLHNSLRSLIQTRQASVALFFTFEYT
ILATTTVSTFVKYVFYVSDMLMEGQWERKAVYTFYLELVRDLLHLSLYIIFFLIIFVSYG
IPLHLIRELYETFRSFKMRIADYVRYRKITSNMNERFPDATQDELNATDAICIICREEMI
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVAPPENGQAGPSRQHGVPQVPSQPVGSV
TTSSSQSPSGGTETAKLSRHHAVLQAAAMAASLYETSFTYCPPSSFWPPGYGSNYNDNAH
SEAFSGRTMPPTGEAAASEQSICCERSSLGNLNLQGSLLRAQQDVLRSQIQLLQTQLQAL
QQQAHQSKPDNPDPKGKSIITFDLTASKPDGAHQQDS
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctccaaacatatgctggatttagtttcttagcaaccatgagtgctatctac
tatgcatttagcagcagagggcagttctatcctgccatggtgtacctttctacatccaag
atatgttttgttctcctcttgaacatgggtctagtcatcatgtgtataatgtggcagtta
gtgaagcgattatttctgggttcactcagagaagcagaagttgaaaggcttaatgaacaa
tcatggagggaggtcatggatattctttttgcgattaccatatttcggcaagacttctca
gttacttttctagctatggttacagctcttctgttgatcaaagcattgcattggttggcc
caaaagagagttgaatatatagagaccactccgtccgtttctatgctgtcacacatacgg
ataatttcatttatgtttttcctcctcttcattgactgtcttttcttgcacaattctttg
aggtctttgatacaaactcggcaagcatcagttgcactgttttttacatttgaatatacg
atcttagcaactacaactgtgtcaacatttgtgaagtatgtattctatgtaagtgacatg
cttatggaaggacagtgggagaggaaggctgtttatacattttaccttgagcttgttcgg
gaccttcttcacctgtctttgtacataatatttttcctaatcatctttgtgagttatggt
atcccactgcatctgatacgtgagctatatgagacattccgcagttttaaaatgcgtata
gcagattatgttcgataccgcaaaattacctcaaatatgaatgagcgtttccctgatgca
acacaagatgaacttaatgcgactgatgctatatgcattatatgtcgagaagagatgatt
acagctaagaaattgatatgcggacacctttttcatgttcattgcctaaggtcatggtta
gagagacagcatacttgccccacctgtagggctttggttgcacctcctgaaaatgggcaa
gcaggaccgtctaggcaacatggagttccacaagttccaagtcaacctgttggatcagtg
accacttcatcttcacagagtcccagtggtggtacagaaactgctaaattaagtcgccat
catgccgtgcttcaagcagctgcaatggctgcatccttatatgaaacttcattcacttac
tgcccaccaagttccttctggccaccgggctatggatcaaattacaatgacaatgcacat
tcagaggcattcagcggaaggacaatgccgccaactggagaagcagctgcttctgaacaa
tccatctgctgcgagagatcatccctcggcaatctaaatcttcaggggtcattattgagg
gcgcaacaagatgttctccgaagtcagattcagcttctacagacacaattgcaagctctg
caacaacaagcccatcaatccaaacctgataatcccgatcccaaaggaaaatctatcatc
acattcgatcttactgcatccaaaccagatggtgctcaccaacaagatagttga
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