Zingiber officinale (ginger): 122033796
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Entry
122033796 CDS
T08725
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122033796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122033796
03009 Ribosome biogenesis [BR:
zof03009
]
122033796
04131 Membrane trafficking [BR:
zof04131
]
122033796
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
122033796
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
122033796
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
122033796
Membrane trafficking [BR:
zof04131
]
SNARE
SNARE associated proteins
Others
122033796
Autophagy
Aggrephagy
Other aggrephagy associated proteins
122033796
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122033796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_2
AAA_2
RuvB_N
UPF0242
TIP49
AAA_5
AAA_16
Motif
Other DBs
NCBI-GeneID:
122033796
NCBI-ProteinID:
XP_042448890
LinkDB
All DBs
Position
11B:13691630..13721275
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AA seq
681 aa
AA seq
DB search
FTAYFLEAYRPVRKGNLFLVRGGMRSVEFKVIETDPVEYCIVAPDTEIFCEGEPVKREDE
DRLDEVGYDDVGEVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSSKTLIA
RGVANEIGAFFFCINGLEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREN
THGEVERRIVSQLLTLMDGLKSRAHVIVIGARNMPNTIDPALRRFGRFDRELDIGVPDEV
GRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLVALCTEAALQCIREKMDIIDLEDE
SIDAEIMNSMSVTNEHFKTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRETARVAGF
YAALIDEELRLEEAKLQAKDSLVVPKVLEGLPAETPAVPLPVVSSLVAVASSAAISLPVI
ELTSPVSSEKSLTDVAPSKHPGRKLTGAPPPKRRLILPTEELLSEGFASADLPPAEPTLA
DLYPSLVFSSSSSSSTTASGGTSFTSPLSFPESGSSTILVLPVLLGGSFSIAREEICPLF
EGPTPPEMFDQFSHEETKRWMANMDRARLMSHLYHENERLKQKVAKMSSTALSEESKKQY
EAQLESLQSRFKSATYLNNELSSKLERQVAETNKLKSDYESTLADKLKALQLKDDEITSL
NTSLNTAKTEASTKDAELKSS
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
tttacagcttattttttggaagcatatcgtcctgttagaaaagggaatcttttccttgtc
aggggtgggatgaggagtgttgagtttaaggttatagaaactgatcctgtagagtactgc
attgttgctcctgatacagagattttctgtgagggggagccggtgaaaagggaagacgag
gataggcttgatgaggtaggttatgatgatgttggagaagttaggaaacaaatggctcag
ataagggagctagtagagcttcctctaagacatcctcaactatttaaatctattggtgtc
aagccgccaaaaggtattttgttgtatggtccacctggttcaagtaagacattaatagct
agaggagtcgcaaatgagataggagcttttttcttttgcatcaatggtctagagatcatg
tcaaagctagccggtgagagtgagagtaatttgaggaaggcttttgaggaagcagagaaa
aatgcaccctcaattatcttcattgatgagattgattccattgctcctaagagagagaac
actcatggggaagttgaaaggcgcatagtgtctcaactgttgaccttgatggatgggttg
aagtctcgtgcgcatgtaattgtcattggggctaggaacatgccaaacactatcgatcca
gctcttagacgattcggtaggtttgacagagaacttgacattggtgttcctgatgaggtt
ggccgattggaggttcttcgcatccatactaagaacatgaagctatctgatgatgttgat
ttggaaaggattgctaaggatactcatggctatgttggggctgaccttgttgctttatgc
actgaagctgctctccagtgtatccgtgaaaagatggacataattgatctagaagatgaa
tcaattgatgctgagattatgaattctatgtctgttacaaatgaacactttaagactgct
ttgggatctagtaacccatctgccctccgtgaaactgttgttgaagtaccaaatgtcagc
tgggatgatattggtgggctggaaaatgtcaaaagggaaactgcaagagtggctgggttt
tatgctgcgctgattgatgaagaactacgcctggaagaggccaagctgcaggctaaagac
tctctagtggttcctaaggtccttgagggccttcctgcagaaactcctgccgtccctttg
ccagttgtttcttcattagtggctgttgcttcttcagcagccatttcccttcccgttatt
gagcttacatcccctgtaagctcagaaaaatccctgactgatgttgcccccagcaaacac
ccaggacgcaagcttaccggagctcctcctcccaagaggagactcattcttcctactgaa
gaattactttcagaaggttttgcttctgctgaccttcctcctgctgagcctactctagct
gacctctatccttctcttgttttctcttcctcgtcttcttccagcaccactgcttctggc
ggcacttcttttacctctcccctatcttttccagagtctggttcttctaccattctcgtc
ctcccggtactgctaggaggttctttttccattgctcgggaggaaatttgccccctattt
gaaggtcctacccctcccgagatgtttgatcaattttcccatgaggaaaccaagcgatgg
atggccaatatggatcgggctagactaatgagccacttatatcatgagaacgagaggctt
aaacaaaaagttgctaagatgtcctctaccgcactttcagaggaatccaagaaacaatat
gaagcccaacttgagagccttcagtctcgatttaaatcggctacataccttaataatgaa
ttgtcttccaaattagagaggcaggttgctgaaactaacaaactgaagtcggattacgag
tccacccttgctgacaaactcaaagctctgcagttgaaggatgatgaaataacttcctta
aacacttccttgaatacagccaagacagaggcctccaccaaagatgctgagctgaagtct
tcctag
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