Zingiber officinale (ginger): 122034007
Help
Entry
122034007 CDS
T08725
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122034007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122034007
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122034007
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122034007
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
122034007
NCBI-ProteinID:
XP_042449078
LinkDB
All DBs
Position
11B:70194798..70196990
Genome browser
AA seq
346 aa
AA seq
DB search
MPYPHPPESFGKERRQQGRRRAPSDDGDLAAVCPCEMVGKVKGEGRAVEGKNPVRLQIVN
NDMLISSSAASTSRVEVRSVWAHNLDEEFSLIRSALPFHPFVALDTEYPGVVVTSKGPYC
TLTLPQRYDLIRANVEALRIVQVGLTLSDAAGNLPCDLYSDGTYVRYVWEFNFRDFDISR
DRYAPSSVELLKANGIDFQKNQIWGIDSCRFAQHLATSGLLSFGHFSPVSWVTFQGAYDF
AFLVKMLTCDYELPKTVREFLHLVHFFFGKRVFDVKHLSKHCRGLYGGLERVASTVQVER
AVGSRHQSGSDSLLTWQVFYQIASRVNPQLIDRPEHMGALFDLELQ
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgccttaccctcacccacctgagagctttgggaaggagcggcggcaacaaggaaggcgt
cgtgctccgtcggatgatggggatctagcagcagtgtgcccatgtgagatggttgggaag
gtgaagggagaaggaagagcagtggaagggaagaaccccgtgcggttgcaaattgtcaac
aacgatatgctaatttcctcttccgccgccagcaccagcagagtcgaggttcgctccgtg
tgggctcataacctcgacgaggagttttccctcatccgttccgccctcccgttccacccc
ttcgtagcattggacaccgagtatcctggcgtcgtcgtcacttccaaaggtccctactgc
accctcaccctcccccagcgctacgacttgatccgggccaacgtcgaggccctccgcatc
gtccaggttggtctcactctctccgacgctgccggcaacctcccatgtgacctttacagt
gacggcacttatgtgcgttacgtgtgggaatttaatttccgcgacttcgacatcagccgc
gaccgttacgccccttcctccgtcgagctgctcaaggctaatggcatcgacttccaaaag
aatcaaatatggggcatcgactcttgcagattcgcccagcacttggccacctccggcttg
ctttcctttggccacttttctcccgtctcctgggttaccttccaaggcgcctatgacttc
gcgttcctagtgaagatgctgacatgcgactatgaattaccaaagaccgttcgtgagttc
ttgcaccttgttcacttctttttcggcaaaagggtgttcgatgtgaagcaccttagcaag
cattgtcgtgggctttacggaggattggagcgggtggcctctaccgtccaagttgagcga
gcagtgggatctcgacatcagtccggctccgatagcttattaacatggcaggtgttctac
caaatcgcttctcgtgtgaatccacaactcatcgatcgtccagaacacatgggagcactc
tttgacctcgaactccaatag
DBGET
integrated database retrieval system
