Zingiber officinale (ginger): 122034045
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Entry
122034045 CDS
T08725
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122034045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122034045
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122034045
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122034045
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
122034045
NCBI-ProteinID:
XP_042449117
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All DBs
Position
11B:74501640..74502527
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AA seq
295 aa
AA seq
DB search
MAVAVVNNVNDMLISSSAASTSRVEVRSVWAHNLDEEFALIRSAVPFHPFVALDTEYPGV
VVASKNPYCTLTLPQRYELIRANVEALRIVQVGLTLSDAAGNLPCAIYSDGTCVRYVWEF
NFRDFDISRDRYAPSSVELLKANGIDFQKNQIWGIDSCRFAQHLATSGLLSFGHFSPVSW
VTFQGAYDFAFLVKMLTCDCKLPKTVREFLHLVHFFFGKRVFDVKHLSKHCPGLYGGLER
VASTVRVERAVGSRHQSGSDSLLTWQVFYQIASRVNPQLIHRPEHMGTLFDLQLQ
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcgcagttgtcaacaacgttaacgatatgctaatttcctcttccgccgccagc
accagcagagtcgaggttcgctccgtgtgggctcataacctcgacgaggagttcgccctt
atccgctccgccgtcccgttccaccccttcgtcgcattggacaccgagtatcctggcgtc
gtcgtcgcttccaaaaatccctactgcaccctcaccctcccccagcgctacgaattgatc
cgcgccaacgtcgaggccctccgcatcgtccaggtcggtctcaccctctccgacgccgcc
ggcaacctgccatgtgccatctacagcgacggcacttgtgtgcgttacgtgtgggaattt
aatttccgcgacttcgacatcagccgcgaccgttacgccccttcctccgtcgagctgctc
aaggctaatggcatcgacttccaaaagaatcaaatatggggcatcgactcttgcagattc
gcccagcacttggccacctccggcttgctttcctttggccatttttctcccgtctcctgg
gttaccttccaaggcgcctatgacttcgccttcctagtcaagatgctgacatgcgactgc
aaattaccaaagaccgttcgtgagttcttgcaccttgttcacttctttttcggcaaaagg
gtgttcgatgtgaagcaccttagcaagcattgtcctgggctttacggaggattggagcgg
gtggcctctaccgtccgagttgagcgagcagtcggctctcgacatcagtccggctccgat
agcttattaacatggcaggtgttctaccaaatcgcttctcgtgtgaatccacaactcatc
catcgtccagaacacatgggaacactatttgacctccaactgcaatag
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