Zingiber officinale (ginger): 122034207
Help
Entry
122034207 CDS
T08725
Name
(RefSeq) SWI/SNF complex subunit SWI3D-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122034207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122034207
03036 Chromosome and associated proteins [BR:
zof03036
]
122034207
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122034207
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122034207
PBAF complex
122034207
GBAF(ncBAF) complex
122034207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
122034207
NCBI-ProteinID:
XP_042449288
LinkDB
All DBs
Position
11B:81375145..81382298
Genome browser
AA seq
941 aa
AA seq
DB search
METKGGNDRASLGSAEASAPNSTAAPAPARPPPPETLTEAPRRRTGGNKRKASGSASSSS
APTKRPAKERSLLHHVLPVHNGPCTRARQSPLKHATAAGNRPQQLASKSSLASDAGGKGA
LSAAGSIKAEEEVVHEQLVDKEFEAIRSRGAKVHAVPTPAGWFSWKMVHPVEKHTLPSFF
DGKSENRTPEVYMEIRNSIMKKFHSDPEILIELKDFSELSVGDIDARQEVFKFLDHWGLI
NFHPFPPAKSEAIIADAYDEDKTSSLVDKLYQFETIQSLPQIASKYESLLPKPQSLLPES
SLGDDLVRRVGVDYHCNSCSADCSRKRYHCQTQADFDLCTDCFNDGKFGSGMARADFILM
ESAEFPGLNGGSWTDQETLLLLEALELFGENWNEIAEHVATKTKSQCILHFLQMPIEDSF
IENDDVADDNYLDSNDHITENKEPTAKSTSEVVEADKKETNESSREDTVGVETSKLDAFE
TVDEPMTSKPDSLVDGNTCNAKNFHEGETNFAIDALKAAFQAVGYFPEQGLGSFAEAGNP
VMALAAFLSSIVEPDAVLTSCRSSLGAMSEDMPGVQLATRHCFILEDPPKDCKDPLTTVS
SVAEAINKESNTDERKMQSLDATNKSKDEDVASVSIENEKSLLLQDSSTTHTDEKAAQEA
SPSKKAPSPVQNSVDQSLPTEKSLSANVNDVADTALTVTSMPSASKETEDLASKEQIAKG
QESSDSMLVDEKLNSVDNSNDLASTDMIPQQTDSSKGAENTDTSIVLEGHEQMQTGASTN
GTKEKADDCERNEASNVEKNFNPTEIEDGHNLDRLKRAALTALSAASVKAKLLAKLEEDE
VRRLISLIIDKQLHKLETKLSLFSDIESVVLRMREQTEKARHRLMFERSQIIAARLGVPP
SSLRANQASLPANRLAMGYGTSGPRPFNMATQKQPPPLSRQ
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggagacgaaaggcggcaacgaccgtgcatccctgggcagcgcagaggcatctgcaccc
aactcaacggctgcgccggcgcctgctcggccaccccctccggaaaccctaaccgaagct
ccacggaggaggactggcggaaacaagagaaaagcctcgggttcagcctcctcctcctcc
gcacccacgaagcgcccggccaaggagaggagtctcctccatcacgtcttgcccgtgcat
aacggcccttgtactagagcccggcaatcacccctcaagcacgcgaccgccgccggaaat
aggcctcaacagcttgcctcgaagtcctcgttggcgtcggatgctgggggtaagggcgct
ttatctgctgctggttcgattaaagcggaggaggaggtagttcatgagcaactcgtggat
aaggagttcgaagccattcgatcaagaggtgccaaggttcatgctgttcctactcctgct
ggatggttctcatggaagatggttcatcctgtggagaagcataccctgccttcttttttc
gatggcaagtccgagaacaggacgcctgaagtttacatggagattaggaattctatcatg
aagaaatttcattctgatccagaaatactgattgaactcaaagatttttctgagctctct
gtcggagatattgatgcgaggcaagaggtcttcaagttcttggaccactggggtctgata
aatttccatcctttcccaccagctaaatctgaagctatcatagctgatgcctatgatgaa
gataaaacatcgtctttggttgataagttgtatcaatttgaaacaattcagtcattgccc
cagattgcttctaaatatgaatccttgctacctaagccacaatctttgcttccagaatct
agcctaggtgatgatttggttaggcgagttggtgttgattaccattgcaactcttgctca
gctgattgctctagaaagcgttaccattgccaaacgcaggcagattttgatttgtgcact
gattgctttaatgatggtaagtttggatctggcatggcacgagctgattttattctgatg
gaatcagcagagtttcctgggttgaatggtggaagttggacagatcaagaaacattactt
ctattagaagccttagagcttttcggggagaactggaatgagattgcggaacatgttgct
accaaaaccaaatcccaatgcatcttacattttcttcaaatgcccattgaggattctttc
atagaaaatgatgatgttgctgatgataattacctagatagcaacgatcacattacagaa
aataaagaaccaacagccaaaagtacttctgaggtggtggaagcagacaagaaagaaaca
aatgaatcctctcgtgaagatactgttggagttgaaaccagtaaactagatgcttttgag
acagtagatgaacctatgacttccaaaccagattctctggtggatggaaatacttgtaat
gctaaaaatttccatgaaggtgagaccaactttgccattgatgcactgaaggctgcattt
caggctgtaggatattttcctgaacaaggattgggttcatttgcagaagctggaaaccca
gtgatggcacttgcagcattcttatctagcattgttgaacctgatgctgttctaacctct
tgccgcagttctcttggagccatgtcagaagacatgcctggtgttcagcttgctactagg
cattgttttatccttgaagatccaccaaaagactgcaaggacccacttaccactgtgagt
tctgttgccgaagccatcaacaaggagtctaacacggatgaaaggaaaatgcaaagttta
gatgccactaacaaatccaaagatgaggatgtagcttcagtttccatcgagaatgagaaa
tcccttttgttgcaagattcctcaacaacacacactgatgaaaaagcagcacaggaggct
tctccttcaaagaaagcaccaagccctgtccagaactctgttgaccagtctttgcctaca
gagaaatctttatctgctaatgtgaatgatgtagcagatactgctttgactgtaacctca
atgccaagtgcttccaaagaaactgaagatttggcttctaaagaacaaattgcaaaaggt
caggagagtagtgattctatgttagtggatgagaaactaaatagtgttgacaattcaaat
gatttagcttcaaccgacatgatacctcagcaaacagattcatccaaaggcgcagaaaat
acagatacttcaattgtattggaaggacatgagcagatgcaaacaggggcttcaactaat
ggaaccaaagaaaaagcagatgattgcgaaaggaacgaggcaagcaatgtggagaaaaat
ttcaacccaactgaaattgaagatggccacaacttagatagattaaaacgtgctgcactt
actgcactctcagctgcttctgttaaggctaagcttcttgccaagctggaagaagatgaa
gtgcggagacttatctcattaatcattgataagcagctgcacaagttggagacaaaattg
tcacttttctctgacattgaaagtgtggtgttgcggatgagagaacaaacagagaaggca
agacacagactaatgtttgagcgttctcaaattattgcggctagacttggtgtgccccct
tcctctctcagagcaaaccaggcttccctaccagcgaatcgtttggccatgggatatggt
acctctggcccaagaccttttaacatggcaacccagaagcaaccaccacctctaagtcgg
caatga
DBGET
integrated database retrieval system
