Zingiber officinale (ginger): 122034226
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Entry
122034226 CDS
T08725
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122034226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122034226
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122034226
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
122034226
NCBI-ProteinID:
XP_042449309
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Position
11B:complement(19820144..19828998)
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AA seq
485 aa
AA seq
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MASLADSFLADLDELSDNEAHLDDEDLDAAAMEEDTEGDMPDIESLNYDDLDSVSKLQKT
QRYNDIMQKVDNALEKGTDISSAGIVLEDDPEYQLIVDCNALSVDIENEILIIHNFIRDK
YRPKFPELESLVHHPIDYARVVKKIGNEVDLTLVDLEGLLPSAIIMVISVTASTTSGKPL
SKENLNKTIDACDRALALDLAKKKVLDFVESRMGYIAPNLSAIIGSAVAAKLMGIAGGLS
ALAKMPACNVQLLGAKKKTLAGFSTATSQFRVGYLEQAEIFQSTPPSLRTRACRLLASKS
TLAARVDSTRGDPTGKAGRNLRDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRL
RKMKERYAVTDMMKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSIGQSKLAAK
AAKRFKEKQYGSGGATSGLTSSLAFTPVQGIELTNPQALGNQLGSGTQSTYFSETGTFSK
IIKRA
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggctagccttgcagattcattcttggctgatcttgatgagttatctgacaatgaagcc
catcttgatgatgaggatcttgatgctgcagctatggaagaagatactgaaggtgacatg
ccggacattgaatctcttaattatgatgatcttgatagtgtttcaaagttgcaaaagaca
caaagatacaatgatatcatgcagaaagtggacaatgcactagagaaaggaacagatatt
tctagtgctggtatagtgttggaggatgatcctgagtaccaactcattgttgactgtaat
gctttatctgtggatattgaaaatgagattcttataattcacaactttattcgagacaaa
taccgaccaaagtttccagagctcgagtcccttgttcatcatccaattgattatgctcgt
gttgttaagaagattggaaatgaagtggacttaacccttgttgatttggagggtcttcta
ccttcagctattattatggttatttctgtgacagcatcaaccacaagcgggaagcctctt
tccaaagagaatctgaataaaacaattgatgcatgtgatagagcccttgctcttgacctt
gcaaaaaagaaagtacttgattttgttgagagtagaatgggctatattgcaccaaatctt
tcagcaattattggaagtgcagttgcagctaaacttatgggcattgctggtggtttgtct
gcattagcaaaaatgcctgcttgtaatgttcagcttcttggggcaaagaaaaagacactt
gctggattttccactgcaacctctcaattccgtgtaggttatcttgagcaagctgagatt
ttccaaagcacccctccttctcttagaactcgtgcttgccggctattggcatcaaaatca
actctagctgcaagagtagattctactagaggggatccaacaggaaaagctggaagaaac
ttgcgagatgaaatccttaaaaagattgaaaaatggcaggaaccaccccctgctaagcaa
ccaaaacctcttccagttccagattctgagcccaaaaagaagagaggtggccgtcggttg
aggaaaatgaaagaaagatatgcagtgacagatatgatgaagctggcaaataggatgcaa
tttggagtcccagaagagagctctttaggtgatggcttgggtgaaggatatggtatgctt
ggacaggcaggaagtggaaagttacgtgtgtcaatagggcagagcaaacttgcagctaaa
gctgctaaaaggttcaaggagaagcaatatggaagcggtggggcaacatctggattgaca
tcaagtctagcattcacacctgtgcaaggaatagaacttacgaacccgcaagcacttggg
aatcagctcggcagtggcactcaaagcacctacttctcggagacaggaacattctcaaag
atcatcaagagggcatag
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