Zingiber officinale (ginger): 122034231
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Entry
122034231 CDS
T08725
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
zof04812
]
122034231
Cytoskeleton proteins [BR:
zof04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
122034231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_SCAP
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
eIF2A
Beta-prop_SPT8
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_Vps41
Beta-prop_IP5PC_F
Beta-prop_DCAF12
PROPPIN
Beta-prop_RIG_1st
VPS8_N
Glyco_hydro_52
Motif
Other DBs
NCBI-GeneID:
122034231
NCBI-ProteinID:
XP_042449319
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Position
11B:8650266..8681500
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AA seq
777 aa
AA seq
DB search
MAATKRAYKLQEFVAHSSNVNCLKIGRKTSRVLVTGGEDHKVNVWAIGKPNAILSLSGHM
SAVESVSFDSSEVLVAAGATSGSIKLWDLEEAKIIRTLTGHRSNCIAVDFHPFGEFFASG
SLDTNLKIWDMRRKGCIHTYKGHTRGINAIKFTPDGRWVVSGGEDNIIKLWDLTAGKLLH
EFKLHEGQIQCIDFHPHEFLLATGSADKTVKFWDLETFELIGSSGPEASGVRSMTFNPDG
RTFLCGLHESLKVFSWEPIVCHDNVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLS
CIEPYAIASPRLNGHSGQKSTSDDNPSMPADNIKSSMRRLSILQSSETNSETKSLPATVS
APGTPQRIGACASTRVPLTAPASVSSSVKRSLSKLQSTSNLQTNKADIVPVIVPRDSLRL
QLPSDCTKDSRVGKTTPFDIQSKFTEFWKVSNIKENTDKTDISIQSGYLSSSNIEQNEFL
GQTPVSSGNAGTQRVSADENHLDGIKNLIKGRIRSNSFREPRLHFEQENFKIRVNKPKEA
FSSDVSRRGRARSLVNCEGMEPSPSYDRPTLSSSSEITVVARSPYSLRNHRQNTEIETLP
TLSASDEDSIEIILKSHDQFLNSTQSRLTKLQVVQRLWERNDVKGVIRALERMSDHSVSA
DVLCSLKDESDIITLDIFTSLLPLLTSLLESKMDRHLGVALEMLLELVRIFGPVIHSTVS
AGPSVGVDLQAEQRLERCNLCIVELEKVKHSISSPMRRGGSIAKNARELNLALQGVL
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggcggccactaaacgggcttacaagctacaggagtttgtcgctcattcttccaatgtg
aattgcctaaagattgggaggaagacgtcaagggtccttgtgacgggaggggaggaccac
aaggtcaatgtttgggctattggaaagcccaatgctattttgagcctaagtggccatatg
agcgcagttgaatcggtaagttttgattcatcagaggtattggttgctgctggtgcaact
agtgggtcaataaaattgtgggatttagaagaggcaaagattattcgcactctaactggt
cataggtcaaactgtatagcggttgattttcatccatttggtgaattctttgcgtctggg
tcactagatacaaatcttaaaatatgggatatgagaagaaagggatgcatccatacctac
aagggccatacaagagggattaatgctattaaattcacccctgatggccgatgggttgtt
tctggtggggaagacaatattataaagctatgggatcttactgctggaaagcttttacat
gaattcaagctccatgagggtcaaattcagtgtattgattttcatcctcatgagtttctg
ctggcaacaggttcagctgataagactgttaaattctgggatctcgagacttttgaatta
atagggtcttctgggcctgaggcttctggtgtacgttctatgacatttaatcctgatggg
agaacattcctctgtggtttgcatgaaagtctgaaggtgttttcttgggaaccaatagta
tgccatgataatgtagatgtgggatggtctagactatcagatatgaatgttcacgaggga
aaacttcttggatgttcatacaatcaaagttgtgttggcgtatgggttgtggacctgtct
tgcattgaaccatatgcaattgctagtcctagattaaatggtcattcaggccaaaagtct
acatcagatgataatccatctatgccagctgataacataaagtcaagtatgaggagatta
tcaatattacaaagttctgaaacaaattctgagacaaaatcattaccagcaacagtcagt
gctccaggtacccctcaaagaattggggcatgtgctagcacgagagtacctctgacagca
ccagcatctgtttcttcctctgtaaaaagaagtttatcaaaacttcagtccacatccaac
cttcagaccaacaaagcagatatagtaccggtgattgttccaagagatagcttgaggcta
cagttgccttctgattgtactaaggactctagggttggcaaaacaacgccatttgatatc
caatcaaaatttactgaattttggaaggtgtcaaacatcaaagagaatacagataaaaca
gatatatccattcagtctggatatttgagtagtagtaatattgaacaaaatgaatttctg
ggccaaactcctgtttcttctggcaatgctggaactcaacgtgtgtcagctgatgaaaat
catctggatggcattaagaatttgattaaaggaaggattagatctaattcattcagagag
ccacgtttgcactttgaacaggaaaattttaagattagagtcaataagccaaaggaagca
ttctcatctgatgtttcacgacgaggaagagcaaggtcacttgtaaactgtgaggggatg
gaaccttccccaagctatgatcggccaacattaagcagttcttccgagataacagttgtt
gctcgctccccctactctttgagaaatcacaggcagaatactgaaattgaaactctacct
actctatctgcttctgatgaggattctatagaaattatattgaagagtcatgaccaattc
ttgaactcgacacaatctcgattgaccaaattacaggtagtgcagcggctttgggaaaga
aatgatgtcaaaggtgtcatcagagcacttgaaagaatgtctgatcacagtgtttctgct
gatgtattatgctctctgaaagatgaaagcgatatcattactctggatatcttcacctct
ctcctaccacttttgactagtcttcttgaaagcaagatggataggcatttaggtgttgcc
ctggaaatgttgctggagcttgtaaggatatttggtcctgtaatccattcaaccgtatcg
gcaggtccatctgttggtgttgatcttcaagcagaacagaggctggaaaggtgcaattta
tgcatcgttgagctggaaaaggtcaagcatagtatttcttccccgatgagaagaggaggg
tctatcgcgaagaatgcacgcgagctgaatcttgctctacagggagttctgtga
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