Zingiber officinale (ginger): 122034328
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Entry
122034328 CDS
T08725
Name
(RefSeq) transcription initiation factor TFIID subunit 15b-like isoform X1
KO
K13098
RNA-binding protein FUS
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122034328
09122 Translation
03015 mRNA surveillance pathway
122034328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122034328
Spliceosome [BR:
zof03041
]
Complex A
Other components
Complex A specific factors
122034328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
122034328
NCBI-ProteinID:
XP_042449465
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All DBs
Position
11B:complement(65705550..65717794)
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AA seq
460 aa
AA seq
DB search
MSSSYGSGGPDDTAQPPRGGSYGRGRGGGGGYGGNQGNRGGSGGYGGGGGGYQGGDRGNR
GGGGGPRGGGRGGGVGREGDWRCPNSSCGNMNFARRVECNKCGAPCPGGGRGGGSGDSNR
GGDGGGGFNRGGGGDYNDGQGGARGSYNNRGGGYSGNRGGRSDYEGRGGDFGGRGASYND
NNREREDDRYGQVAPPPSAGYGGPGGAAGNYTPPNCYGANSAYAGDSVTPPSNYGGPNSY
PPPYGVPPPNAYANEGSLARGGPPSSYGGPPSRHGGGYGDRGNPGRGGGAPPRHEGGAYG
AAPTDAGAQIKQCDESCGESCDNSRIYISNLPPDVTTDELRDLFGGIGQVGKLKQKRGYK
DQWPWNIKIYTDESGNNKGDAVLSYEDPAAAHSAGGFYNNYDMRGYKINVAMAEKTALKA
APSYGGGRGGYGGGDRRRDNYNGGGGPERHQYGGQRSRPY
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagttcctacggctccggtggacctgatgacactgcgcagcctcctcgcggcggc
agttacggacgaggccgtggaggcggcggcgggtacggtggaaaccaggggaatcgaggt
ggaagcggcggctacggtggcggtggcggtggctatcaaggcggagatcgtggaaaccgg
ggaggtggcggtggaccccgaggtggaggtcgtggtggcggagttggtcgggagggagat
tggcgatgccccaactccagttgcggaaatatgaacttcgcaagaagagtggagtgcaac
aagtgtggagctccgtgtcccggtggtgggcgtggtggtggttctggtgacagcaacaga
ggaggtgatggtggcggtggtttcaatagaggtggtggtggtgattataatgatggtcaa
ggtggtgcccgtggtagttataacaaccggggcggtggatattctgggaaccgtggcggt
agaagtgattatgaaggaagaggtggagattttgggggaagaggtgcttcttataatgat
aataatcgagagcgagaggatgacagatatggtcaagttgcaccgcctccctcagctggt
tatggcggtcctggtggtgctgccgggaattatactcctcccaattgttacggtgcaaat
agtgcctatgctggtgattctgttacacctcctagtaattatggtggccctaattcttac
cctcctccatacggtgtaccccctccaaatgcatatgctaatgaaggttctttggctcgt
ggtggtccaccatctagctatggcggtccaccatccagacatggtggtggatatggtgat
cgtgggaaccctggccgtggtggtggtgctccacctcgccacgagggtggtgcatatggt
gctgctcctactgatgctggtgctcagatcaaacaatgtgatgaaagctgtggagaatct
tgtgataactcgaggatctacatctcaaacttgcctcctgatgtgactacagatgagcta
cgtgaccttttcggaggaatcggtcaggttggcaagctcaagcaaaagcgaggctacaaa
gaccagtggccttggaatataaagatatatacagatgaatctgggaataacaaaggagat
gctgtgctctcatatgaagatcctgctgctgctcattctgccggaggcttctataataac
tacgacatgagagggtacaagattaatgttgcgatggcagagaagactgcactcaaagca
gccccttcatatggtggtggcagagggggttatggtggaggagatcgacgtagagataat
tataatggtggtggtggacctgagaggcaccagtacggcggccagcgatctcgaccgtat
tag
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