Zingiber officinale (ginger): 122034330
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Entry
122034330 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122034330
03041 Spliceosome [BR:
zof03041
]
122034330
03036 Chromosome and associated proteins [BR:
zof03036
]
122034330
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122034330
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122034330
mRNA cycle factors
Common to processing body (P body) and stress granule
122034330
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122034330
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122034330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122034330
NCBI-ProteinID:
XP_042449469
LinkDB
All DBs
Position
11B:85138197..85144717
Genome browser
AA seq
634 aa
AA seq
DB search
MRTSWADAVANAESSAAVTSASPSNVAIGGASPSRGGRAAYVPPHLRNRQQSSESSAASS
APAPSIADSPSGIRKPAFFVASDAGGSRRSSGPIRDSVRPSSSGARGGSGGWNSRGAGWD
RREREANPFADDDDDAAEAAFNSQENSGINFDAYEDIPVETSGENVPPPVNTFAEIDLGD
ALTENIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTVAFCFPIISAILRGTPAP
RQRGSRTAFPLALILSPTRELSVQIHEEARKFAFQTGLRVVVAYGGAPINQQLRDLERGV
DILVATPGRLVDLLERARVSLQHIRYLALDEADRMLDMGFEPQIRKIVEQTDMPPRGQRQ
TMLFSATFPKEIQRMASDFLYNYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSYLMDLLHA
QRDTGAHGKHALTLVFVETKRGADSLEHWLCMNGFPATTIHGDRTQQEREAALRSFKSGA
TPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDSNAS
LARSLSELMQESNQEVPKWLSQYAAARSYGSGSGRSRRTGGGRFGGRDFRRDSSYNRGGG
DYYSGGNGYGGGSSGAPSGYGGGYSGAGVISAWD
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcgaacatcatgggctgatgcagttgcgaacgccgaaagctcggcggccgtgactagt
gcctcccctagcaacgttgccatcggtggtgcttcaccctcgcgtggtggtcgcgctgcc
tacgttcctcctcatcttcgcaaccgtcagcagtcttctgagtcctctgccgcctcatca
gcaccggcgccatctattgctgacagtccttcaggcatcaggaaaccagctttctttgtt
gcctcagatgctggtggaagccgccggagtagtggccctattcgtgactcggttcgccct
agctctagtggcgcgagaggtggaagtggcggctggaactcgagaggtgctgggtgggac
cgcagggagcgtgaggcaaacccttttgcagacgatgatgatgatgccgctgaggctgcg
ttcaatagccaggagaattcagggatcaattttgatgcttatgaagacatcccagttgag
accagcggtgagaatgtgcccccgccagtgaacacgtttgctgaaattgatttgggagat
gcacttactgagaacatcaggcgatgcaagtatgtgaagccaacccctgtccaacgccat
gcaatacctatttcgcttgcaggacgggacctcatggcctgcgctcagacaggatcagga
aagacagtggccttctgctttcctatcattagtgcaatcctgaggggaaccccagcacca
aggcaaagaggatcaagaactgctttcccgctggctttgattttgtcccctacccgtgag
ctatctgttcaaatacatgaggaggccaggaaatttgctttccagactggtttaagggta
gtcgttgcctatggtggagctcctatcaatcaacagttgcgagacttagaaaggggcgtt
gacattcttgtggcaactcctggacgcctggtagatttgttggagagagccagggtttca
ctccaacatattagatatttggccctagatgaggctgataggatgctggatatgggtttt
gagccacaaattcgaaaaattgttgagcagacagacatgcctccacgaggtcaaaggcaa
actatgttatttagtgccacattcccaaaggagatacagagaatggcttctgatttcctt
tataactatatcttccttgcggttggaagagttggttcgagtaccgatttgattgttcaa
agagtggaatttgtacttgattcggacaaaagaagctacctgatggatcttcttcatgcc
caaagagatactggtgcccatggaaaacatgctctaacattggtttttgtggagacaaaa
agaggagctgattcattagaacactggttgtgtatgaatggatttccagcaaccacaatt
catggagataggactcagcaggagagagaagcagctttgcgatctttcaagagtggtgct
acgcctattcttgtcgcaactgatgttgcagcacgcgggttggacattccccacgtagca
catgttattaattttgacctccccaacgatattgatgactatgtgcaccgtattggaagg
acaggtagggccgggaagtcaggccttgctacagcattcttcaatgatagtaatgcatcc
ttggcaaggtctttatctgagttgatgcaagaatcaaaccaagaggtgcctaaatggctc
tctcagtacgcagcagctcgttcttacggcagtggcagtggtagaagccggagaactggt
ggaggtcgcttcggcggccgtgactttaggagagattcctcatacaatcgaggtggtggg
gattattacagtggaggtaatggatacggaggtggttcttctggggcaccctcaggatat
ggaggcggctacagtggtgcaggagttataagtgcttgggactaa
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