Zingiber officinale (ginger): 122034472
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Entry
122034472 CDS
T08725
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
zof03440
Homologous recombination
zof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122034472
03420 Nucleotide excision repair
122034472
03430 Mismatch repair
122034472
03440 Homologous recombination
122034472
03460 Fanconi anemia pathway
122034472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122034472
03032 DNA replication proteins [BR:
zof03032
]
122034472
03400 DNA repair and recombination proteins [BR:
zof03400
]
122034472
Transcription factors [BR:
zof03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122034472
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122034472
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122034472
MMR (mismatch excision repair)
122034472
DSBR (double strand breaks repair)
HR (homologous recombination)
122034472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
Zn_ribbon_6
Motif
Other DBs
NCBI-GeneID:
122034472
NCBI-ProteinID:
XP_042449670
LinkDB
All DBs
Position
11B:61538556..61542529
Genome browser
AA seq
625 aa
AA seq
DB search
MARCVTPGAVSMILSNPSPESPSDVPEIIVQVLDLKPIGTSSTRFTFMATDGEMKLKAML
PTYLSTEIQSGKLQNLGLIRIVDYTCNSIPNQPEKALIVTKCEVVSPALELEIKSDVKKE
KPELTLKPKQEELVNNDVKINEPAIVLKPKQSTVPKSAAQIVQEQHANVAPAARLAISRR
VHPLVSLNPYQGNWTIKVRLTNKGNLRSYRNAKGEGQVFNVELTDEDGTQIQATMFNEAA
AKFYPKFELGKVYYISKGFLRVANKQFTTVNNDYEMNLNENSIVEEVEGETFIPETKYNF
VKIDQLGSYVNGKELIDLIGVVQNVSSTMSIRRKSNNDLIPKRDFTIADDSNKTVTVSLW
NDLATDVGQQLLDMVPTSPVVAIKCLRVGDFQGVSLSTLSRSTVTINPDLPEAKKLKSWY
DSEGKGASMASVGSSMISSTKNGSRSMYSDRVFLSHITDNQSLGQDKPAFFSINVYVSFI
KPDQTMWYRACNTCNKKVIEAVGSGYWCESCQKNDDDSSLRYIMVVKVTDPSGEAWVSVF
NEQAEKIVGCSADELNRIRTEEGDEKYQLKLKEATWVPHLFRVSVVHTEYMHEKRQRITV
RAQAPVDCLAESKYLLEEIEKMSVC
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggcgagatgtgtgactccaggagccgtctcgatgatcctctccaatccttctcctgaa
tcgccctctgacgtgccggagataatcgtccaggttctcgatctgaagcccatcggaacc
agcagcacgcgtttcacattcatggctactgatggggagatgaagctaaaagctatgctt
ccaacttatttatctacagaaattcaatctggaaaattgcaaaaccttggtctcatccgt
attgtggattatacctgcaactccattcctaatcaacctgagaaggctttaatagtgaca
aagtgtgaagtagtttctcctgctcttgagttggaaattaaaagtgacgtgaagaaagaa
aaacctgaactgactttaaagcctaagcaagaggaacttgtcaacaatgatgtgaaaata
aatgagcctgctatagtattgaagcctaaacaatctactgtgccaaaatctgcagcccag
attgtgcaggagcagcatgccaatgttgctcctgctgcacgtcttgcaatatcaagaaga
gtgcatcctcttgtttccttaaatccttaccaaggtaattggaccataaaggttcgactc
accaataaagggaatttgagatcatacaggaatgctaaaggagaaggccaggtttttaat
gtagaattgacagatgaagatggcactcaaattcaggctacaatgtttaatgaagcggca
gctaaattctatccaaagtttgagttggggaaggtctattacatatcaaaagggtttctc
agagttgcaaacaagcagttcacaactgtgaataatgactacgagatgaatctaaatgag
aattccatagtcgaagaggtagagggggaaacttttatccctgaaactaaatacaatttt
gtaaagattgatcaattggggtcatatgtgaatgggaaggagctcatagatttgataggt
gttgttcagaatgtttcatcaactatgagtatccggaggaaaagcaacaatgatttgatt
ccaaaacgggattttactattgcagatgactcgaacaaaactgttactgtctccttgtgg
aatgatcttgctacagatgtcggtcagcaattgctagatatggttcctacctcaccagtt
gtagccataaaatgcctcagagtaggagattttcaaggtgtatctttgtcaactttaagt
agaagtacagtgacaataaacccagatttacctgaagcgaagaaactgaagtcttggtat
gattcagaagggaaaggagcttcaatggcgtccgttggatcaagcatgatctcttccacc
aaaaatggatcgaggtcaatgtattctgatagagttttcctttctcatataactgacaat
caaagtcttggtcaagataagcctgccttctttagcataaatgtctatgtaagcttcatt
aagcctgaccagacaatgtggtatcgagcatgcaatacttgcaacaagaaggttattgaa
gccgttggctctgggtactggtgtgaatcctgccagaaaaatgacgacgacagctcttta
agatacataatggtggttaaggtcacagatccttcgggtgaagcctgggtttcagttttc
aatgagcaagctgagaaaatagttgggtgctctgctgatgagcttaatagaataagaaca
gaggaaggagatgaaaagtatcagctcaagctgaaagaagcaacatgggttccacacttg
ttccgggtcagtgttgtgcatactgagtatatgcacgagaagaggcagaggattacggtt
agagctcaagctccagtggattgtttggcggagtcaaaatacctactggaagagatagaa
aagatgtcggtgtgctaa
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