Zingiber officinale (ginger): 122035196
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Entry
122035196 CDS
T08725
Name
(RefSeq) protein LHY-like isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
122035196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122035196
Transcription factors [BR:
zof03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
122035196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
DUF1079
Motif
Other DBs
NCBI-GeneID:
122035196
NCBI-ProteinID:
XP_042450532
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All DBs
Position
11B:15313148..15323331
Genome browser
AA seq
703 aa
AA seq
DB search
MEGNSSDEELSVIKKRKPYTITKQREKWTQEEHTRFLEALKLYGRAWQRIEEHIGTKTAV
QIRSHAQKFFTKLEKEAVEKGIAPGQVHDIDIPPPRPKRKSSSPYPRKSSIGTLALEEAM
SRKPEKSMPLLGENQVIDIKSDSSGEKLMAIQKLSRKRISEDANCSEVVNAFKDAKSNSI
SSLNKISSSHSAFIEFLPTTKEIMAEKIATNKSSAPLENSKSFIEEETEGRLRKFSQQQS
NLGLEDEGKTSKLEGLTILDSSKGDQTNANKSTMHVSNCRQSMQIDASDSQNPFSLTDQV
GDEANGSLASTIPVQDASTISYFHQPHTASVPLTHLHDDQDVYRSFFNSSTFPSLIVSTL
LQNPAVHAAANLAASFCPSTVLPSTQYIPEAHNAHMNPTPSLEAIAAATVSAAAAWWATQ
GLLPCFPPLAGFAFSPPNINVPCTGISLPVHVTADDNFPKEMQQIEDQHKSEAIKPQHAS
SKSMSSSSSGSDDCDGRDEISKELKDTGSSKIKTLAAHRSSDLDKAMNQKKVDRSSCGSN
TASSSEVETYTMEKKHEKVNDEGKKDYDNFSKCGFNNYRLRSSGSLNESLKVSSEGRLAF
QALFDREVLPQSFSPPQTEKATTLRKKETSESKVNHKNTVCCSTNLNQQGDKSKEEMYIV
HEKRKVHQSGFKPYRRCSVEAESNALAEGAGSKRIRLQGEASS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggaagggaactcctccgatgaagagttgagtgttattaagaaaaggaagccatatacg
atcactaagcaaagggagaagtggactcaggaagagcacacccgctttctcgaagctttg
aaactctatgggagagcatggcaacgcattgaagaacatattggcacaaagacggcagta
caaattaggagtcatgcacaaaagttcttcactaagcttgaaaaagaagcagttgagaaa
ggtattgccccaggacaagttcatgatatagatatacctcctccaagacctaaaagaaaa
tcaagcagtccatatccaagaaagtccagcattggcactctcgctttggaagaagcaatg
agcagaaaaccagaaaaatcaatgcctctccttggcgaaaatcaagtaatagacatcaaa
agtgattcttctggagagaagttaatggcaatacagaaattatcaagaaaaaggatttca
gaagatgccaattgctcagaagttgttaatgcatttaaagatgcaaaatctaattccatc
tcttctttaaacaagatctcttccagccatagtgcatttattgaattcttgccaactact
aaggagataatggcggagaagattgcaactaacaagtcttcagctcctcttgaaaatagt
aaatcttttatagaagaagaaactgaaggacgcctaagaaagttttcacagcagcaaagc
aatttgggtctagaagatgaaggaaaaacatcaaaacttgaagggctgacaatactagat
tcatctaaaggtgatcaaaccaatgcaaataagtctactatgcatgttagcaattgtaga
cagagcatgcaaattgatgcatctgatagccagaaccctttttcactaactgaccaagta
ggtgacgaagcaaatggaagcctggcttctactataccagtccaggatgcatcgacaatc
agttattttcatcagccgcatacagcctctgtacctcttacccatctccacgatgatcaa
gatgtgtataggtcattcttcaactcatccacatttccaagtcttattgtttctaccttg
ctacaaaatccagcagttcatgctgcagcaaaccttgccgcatcattctgcccatctaca
gtgcttccttcaacccagtatatcccagaagctcataatgcacatatgaatccaactcca
agcttggaggctatagctgctgctacagtttctgctgcagctgcttggtgggcaactcag
ggtctattgccgtgttttcctcctcttgctggttttgcattttctcctccaaacataaat
gttccctgtacaggcatatcacttccagttcatgttacagctgatgacaattttccaaaa
gagatgcagcaaattgaagatcaacataagtctgaggctataaaacctcagcatgcctct
tctaaatcaatgtcatcgtcttcttctggctctgatgattgtgatggaagagatgagatt
tctaaggaacttaaagacactggatccagcaagataaagacattagcagctcacagatct
tctgatttagataaggctatgaatcagaagaaagtggatcgctcttcttgtggatccaat
acggcatcaagtagtgaagtagaaacatacaccatggagaagaaacatgaaaaagtgaat
gacgaggggaaaaaagactacgacaatttttcaaaatgtgggttcaacaattacaggctc
agaagtagcggaagtttaaatgaatccttgaaggtctcttcagagggtcgactagccttc
caagcattgtttgatcgagaagtacttccacaaagtttttcacctccacaaactgagaaa
gctaccactttgagaaagaaggaaaccagtgaatcaaaagttaatcacaagaacaccgta
tgttgttcaactaatctgaaccaacaaggcgacaagtcaaaggaagaaatgtatatagta
catgaaaagcgcaaggttcatcaatcagggtttaagccttataggaggtgttcagtagaa
gctgaaagcaacgcattagctgaaggagctggtagcaaaaggattcgtctgcaaggagaa
gcttcctcttga
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