Zingiber officinale (ginger): 122035223
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Entry
122035223 CDS
T08725
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122035223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122035223
04121 Ubiquitin system [BR:
zof04121
]
122035223
03036 Chromosome and associated proteins [BR:
zof03036
]
122035223
03400 DNA repair and recombination proteins [BR:
zof03400
]
122035223
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122035223
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
122035223
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
122035223
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
122035223
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_6
zf-C3HC4_3
zf-RING_5
zf-HC5HC2H_2
zf-C3HC4_4
zf-RING_UBOX
zf-RING_10
PTCB-BRCT
RTT107_BRCT_5
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
122035223
NCBI-ProteinID:
XP_042450573
LinkDB
All DBs
Position
11B:86049839..86055772
Genome browser
AA seq
973 aa
AA seq
DB search
MADLAHLEKMSRELKCPICWSLLKSAVSLACNHIFCNLCIKESMRSMSNCPVCKVPFRRR
EIRAAPHMDNLVSIYKIMEVASGINILSTQTSPLIQAEGDQEKNKLASTIAVKSQMKSKR
KRSSKIRKDISKHSPQRMPKQPSFPANKRVHVTPYPISETPLRSPKFSLLEDPEVQLTDD
KELGRNERMVPDSEEDGLLQPFFWLKDDDGDDESPKKSSQQQIMETPSPYSAPRFSDIKD
SDDDKTTNTSTNKLGFAEDCDSEMFDWTQRACSPELCLTPQRTQMHNQSRKRVLHMPEEK
CQDSYSVAAPSDTVAKEDDKVGRHDAREKNLKKKRKQKGKIISTKVKSLQRCQYDNNGEG
ATDFEEMFKTVSPGEQRIGKVHCERSVNYKKSSSPTDSNNEKDNAARVTHEQSLNISSKA
KYDAIKDNMASYRKGKRIKMTYPDQPMSKKSKAEQVKLLGDIEDSANGAEKQEQVCQVKL
PDSIESIQQHSKLRKCFGSISKKRVKRRQKQKLEETIADKFERNEGSSMVDAIALNNPGS
ENNQISSKTSMDSQTEFIVKSTPSGKEAFQGNALRRCEKLNSPVQCTFCHSSNDTEDSGE
MMHYFNGNPVAPYFNGGTNIIHSHKNCTEWAPDVYFKDGIAINLTAEVSRSRRIKCSCCG
VKGAALGCYEKSCRKSFHFTCAKLMAECKWDTQNFVMLCPLHASIKLPYEVSGFQRQRRK
SSASKSSSQELLTRNSCDNQNQLWTWPLGSPFKWVLCCSALSAAEKETVVKFSKMSGVPV
VDKWKPEVTHVIASTDYGGAYKRTLKVLKGIINGKWILKVDWVRDCVESLKPIAEEKYEA
TIDVHGISNSPRVGRLRAINKEPKLFSGLTFYLSGDYSASYKGYLQDLVIAAGGAILQRR
PISRDNERLLGVSSADKILIVYSVEHPQKYNLDSNRVIDCRRSDAEALADASGCTLVTSA
WIIDSIAACKLQP
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggcggatttggctcatctggagaagatgagccgagagctcaaatgccctatttgctgg
agtctgttgaagtctgcagtatcacttgcatgcaaccacatcttctgcaacttatgcata
aaggagtcaatgagatccatgtcaaactgcccagtctgcaaggttccattccgccgaaga
gaaattcgtgctgctcctcacatggacaatttggtaagcatttacaaaatcatggaagtt
gcatccgggatcaacattttatcaactcaaacaagccctcttattcaagctgaaggcgat
caagagaaaaacaaacttgcaagtacaattgcggtgaaatctcaaatgaaatccaagaga
aagagatcgtccaaaattagaaaggatatttccaaacattctcctcagcgcatgccaaag
caaccttcttttcctgccaataagagggtacatgtgactccataccctatttccgagact
ccactgagatccccaaaattctccttattagaagatccagaagttcagctcacagatgat
aaagaattgggtagaaatgaaagaatggttccagatagcgaggaagatggtttacttcaa
ccatttttctggctgaaggacgatgatggagatgatgaaagtcctaaaaaatcaagtcag
caacaaataatggaaactccttcgccatacagtgctccgcgtttcagtgacatcaaagat
tctgatgatgataagactacaaacacatctactaataagttgggcttcgcagaagattgt
gacagtgaaatgtttgactggactcaaagagcttgctctcctgagctatgcttaacaccc
caaagaacccagatgcataatcagtctaggaagagggttttgcatatgccagaagaaaaa
tgccaggactcgtactctgtggctgcaccatctgatacagtcgcaaaggaagatgacaaa
gttggaagacatgatgcaagagaaaaaaatcttaaaaagaagagaaagcaaaaaggtaaa
ataatatcaacaaaagtaaaatcactacagagatgccaatatgataacaatggagaaggt
gctactgattttgaagaaatgttcaaaacagtgagtcctggagaacaaaggataggcaag
gtgcattgtgaaagatctgttaactataaaaaatcttctagtcctacagattcaaataat
gaaaaagataatgctgcacgtgtgactcatgaacagtctctgaatatatctagcaaggca
aaatacgatgccataaaagacaatatggcatcttataggaaaggcaaaagaattaagatg
acttaccctgatcagccaatgtcgaaaaaatcaaaagctgaacaagtcaagttactagga
gatattgaagattctgctaatggagcagaaaaacaagagcaagtttgccaagtaaaactc
ccagattcaattgagtcaattcaacagcacagtaagctgaggaaatgttttggaagtata
tcaaagaaaagagttaaaaggaggcagaagcaaaagttggaagagacgatagctgacaag
tttgagcgaaatgaaggtagctctatggtggatgcaattgcactgaacaatcctggaagt
gaaaataatcaaatttcatccaagacttccatggattcccaaacagagtttattgttaaa
agtacacccagtggcaaagaagcttttcagggcaacgctttgagaagatgcgaaaagtta
aactctccagttcaatgtactttctgccattcctcgaatgacactgaggattctggagag
atgatgcactattttaatgggaatcccgtagctccatatttcaatggaggcactaacatt
atacattctcacaagaattgcaccgagtgggcccctgatgtctacttcaaagatggaatt
gccatcaatcttacagctgaggtatcgagaagcagaaggataaagtgcagttgttgtggc
gtcaaaggtgcagctcttggatgttatgagaaaagttgtcgaaagagtttccacttcact
tgtgctaagctaatggcagaatgcaaatgggacactcaaaactttgtgatgttgtgcccc
ctccatgcatctatcaagttaccttatgaagtctcaggatttcaaaggcaaagaagaaag
agttccgcgtcaaaaagttcatctcaagaattattaacaagaaattcttgtgacaatcag
aaccagttgtggacctggccgttaggttctcctttcaaatgggtgctttgttgttctgca
ctctctgctgcagagaaggaaacggttgttaaattttctaagatgagcggagttcccgta
gtagataaatggaaaccagaagttactcatgtcattgcgtcaactgactacggtggtgct
tataagagaaccctcaaggtcttgaaaggcatcataaatggaaaatggatactaaaagtt
gattgggtcagggattgcgtagaatcattgaagccaattgctgaggagaaatatgaagcc
actatcgatgtgcatggtatcagcaatagccctcgagtgggaagattgagggctataaac
aaggaaccaaagctcttcagtggattaacgttttatttgagtggggattactcagcatca
tacaaaggctacttgcaagaccttgtgattgcagctggaggagctatcttgcaaaggaga
cctatatcgagggataacgaaagattgctgggcgtctcttccgctgacaaaatactgatc
gtgtatagtgttgaacatcctcagaagtataatctcgacagcaatagagtcatcgattgt
aggcgttctgatgctgaagccctggctgacgcatcaggatgtactctagttaccagtgct
tggattattgactcaattgctgcttgcaagttacagccttga
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